J Biomed Inform - Reuse of termino-ontological resources and text corpora for building a multilingual domain ontology: an application to Alzheimer's disease.

Tópicos

{ concept(1167) ontolog(924) domain(897) }
{ extract(1171) text(1153) clinic(932) }
{ system(1976) rule(880) can(841) }
{ case(1353) use(1143) diagnosi(1136) }
{ model(2656) set(1616) predict(1553) }
{ data(1714) softwar(1251) tool(1186) }
{ research(1218) medic(880) student(794) }
{ method(984) reconstruct(947) comput(926) }
{ inform(2794) health(2639) internet(1427) }
{ method(1219) similar(1157) match(930) }
{ search(2224) databas(1162) retriev(909) }
{ compound(1573) activ(1297) structur(1058) }
{ studi(1119) effect(1106) posit(819) }
{ model(3480) simul(1196) paramet(876) }
{ drug(1928) target(777) effect(648) }
{ method(1969) cluster(1462) data(1082) }
{ can(774) often(719) complex(702) }
{ imag(1947) propos(1133) code(1026) }
{ data(1737) use(1416) pattern(1282) }
{ bind(1733) structur(1185) ligand(1036) }
{ sequenc(1873) structur(1644) protein(1328) }
{ patient(2315) diseas(1263) diabet(1191) }
{ take(945) account(800) differ(722) }
{ assess(1506) score(1403) qualiti(1306) }
{ chang(1828) time(1643) increas(1301) }
{ learn(2355) train(1041) set(1003) }
{ algorithm(1844) comput(1787) effici(935) }
{ method(1557) propos(1049) approach(1037) }
{ howev(809) still(633) remain(590) }
{ studi(1410) differ(1259) use(1210) }
{ system(1050) medic(1026) inform(1018) }
{ perform(1367) use(1326) method(1137) }
{ record(1888) medic(1808) patient(1693) }
{ health(3367) inform(1360) care(1135) }
{ ehr(2073) health(1662) electron(1139) }
{ use(2086) technolog(871) perceiv(783) }
{ cancer(2502) breast(956) screen(824) }
{ use(1733) differ(960) four(931) }
{ process(1125) use(805) approach(778) }
{ method(2212) result(1239) propos(1039) }
{ model(3404) distribut(989) bayesian(671) }
{ measur(2081) correl(1212) valu(896) }
{ imag(1057) registr(996) error(939) }
{ featur(3375) classif(2383) classifi(1994) }
{ imag(2830) propos(1344) filter(1198) }
{ network(2748) neural(1063) input(814) }
{ imag(2675) segment(2577) method(1081) }
{ studi(2440) review(1878) systemat(933) }
{ motion(1329) object(1292) video(1091) }
{ treatment(1704) effect(941) patient(846) }
{ surgeri(1148) surgic(1085) robot(1054) }
{ framework(1458) process(801) describ(734) }
{ problem(2511) optim(1539) algorithm(950) }
{ error(1145) method(1030) estim(1020) }
{ clinic(1479) use(1117) guidelin(835) }
{ design(1359) user(1324) use(1319) }
{ control(1307) perform(991) simul(935) }
{ model(2220) cell(1177) simul(1124) }
{ care(1570) inform(1187) nurs(1089) }
{ general(901) number(790) one(736) }
{ featur(1941) imag(1645) propos(1176) }
{ data(3963) clinic(1234) research(1004) }
{ risk(3053) factor(974) diseas(938) }
{ perform(999) metric(946) measur(919) }
{ research(1085) discuss(1038) issu(1018) }
{ import(1318) role(1303) understand(862) }
{ model(2341) predict(2261) use(1141) }
{ visual(1396) interact(850) tool(830) }
{ blood(1257) pressur(1144) flow(957) }
{ spatial(1525) area(1432) region(1030) }
{ monitor(1329) mobil(1314) devic(1160) }
{ state(1844) use(1261) util(961) }
{ patient(2837) hospit(1953) medic(668) }
{ data(2317) use(1299) case(1017) }
{ age(1611) year(1155) adult(843) }
{ medic(1828) order(1363) alert(1069) }
{ signal(2180) analysi(812) frequenc(800) }
{ cost(1906) reduc(1198) effect(832) }
{ group(2977) signific(1463) compar(1072) }
{ sampl(1606) size(1419) use(1276) }
{ gene(2352) biolog(1181) express(1162) }
{ data(3008) multipl(1320) sourc(1022) }
{ first(2504) two(1366) second(1323) }
{ intervent(3218) particip(2042) group(1664) }
{ activ(1138) subject(705) human(624) }
{ time(1939) patient(1703) rate(768) }
{ patient(1821) servic(1111) care(1106) }
{ can(981) present(881) function(850) }
{ analysi(2126) use(1163) compon(1037) }
{ health(1844) social(1437) communiti(874) }
{ structur(1116) can(940) graph(676) }
{ high(1669) rate(1365) level(1280) }
{ use(976) code(926) identifi(902) }
{ result(1111) use(1088) new(759) }
{ implement(1333) system(1263) develop(1122) }
{ survey(1388) particip(1329) question(1065) }
{ estim(2440) model(1874) function(577) }
{ decis(3086) make(1611) patient(1517) }
{ activ(1452) weight(1219) physic(1104) }
{ detect(2391) sensit(1101) algorithm(908) }

Resumo

Ontologies are useful tools for sharing and exchanging knowledge. However ontology construction is complex and often time consuming. In this paper, we present a method for building a bilingual domain ontology from textual and termino-ontological resources intended for semantic annotation and information retrieval of textual documents. This method combines two approaches: ontology learning from texts and the reuse of existing terminological resources. It consists of four steps: (i) term extraction from domain specific corpora (in French and English) using textual analysis tools, (ii) clustering of terms into concepts organized according to the UMLS Metathesaurus, (iii) ontology enrichment through the alignment of French and English terms using parallel corpora and the integration of new concepts, (iv) refinement and validation of results by domain experts. These validated results are formalized into a domain ontology dedicated to Alzheimer's disease and related syndromes which is available online (http://lesim.isped.u-bordeaux2.fr/SemBiP/ressources/ontoAD.owl). The latter currently includes 5765 concepts linked by 7499 taxonomic relationships and 10,889 non-taxonomic relationships. Among these results, 439 concepts absent from the UMLS were created and 608 new synonymous French terms were added. The proposed method is sufficiently flexible to be applied to other domains.

Resumo Limpo

ontolog use tool share exchang knowledg howev ontolog construct complex often time consum paper present method build bilingu domain ontolog textual terminoontolog resourc intend semant annot inform retriev textual document method combin two approach ontolog learn text reus exist terminolog resourc consist four step term extract domain specif corpora french english use textual analysi tool ii cluster term concept organ accord uml metathesaurus iii ontolog enrich align french english term use parallel corpora integr new concept iv refin valid result domain expert valid result formal domain ontolog dedic alzheim diseas relat syndrom avail onlin httplesimispedubordeauxfrsembipressourcesontoadowl latter current includ concept link taxonom relationship nontaxonom relationship among result concept absent uml creat new synonym french term ad propos method suffici flexibl appli domain

Resumos Similares

BMC Med Inform Decis Mak - Querying phenotype-genotype relationships on patient datasets using semantic web technology: the example of Cerebrotendinous xanthomatosis. ( 0,884596654181159 )
J Biomed Inform - An ontology-based measure to compute semantic similarity in biomedicine. ( 0,855666417249495 )
J Am Med Inform Assoc - Life sciences domain analysis model. ( 0,854828942476204 )
J Biomed Inform - Natural Language Processing methods and systems for biomedical ontology learning. ( 0,85174785666149 )
Int J Med Inform - Semantic similarity-based alignment between clinical archetypes and SNOMED CT: an application to observations. ( 0,850304429190034 )
J Biomed Inform - A federated semantic metadata registry framework for enabling interoperability across clinical research and care domains. ( 0,849898242297327 )
BMC Med Inform Decis Mak - Retrospective checking of compliance with practice guidelines for acute stroke care: a novel experiment using openEHR's Guideline Definition Language. ( 0,849580946405607 )
Appl Clin Inform - Ontology content patterns as bridge for the semantic representation of clinical information. ( 0,843439364382504 )
IEEE J Biomed Health Inform - Exploiting Semantic Web Technologies to Develop OWL-Based Clinical Practice Guideline Execution Engines. ( 0,835209514295187 )
AMIA Annu Symp Proc - Deriving an abstraction network to support quality assurance in OCRe. ( 0,830877439956687 )
J Biomed Inform - Integrating reasoning and clinical archetypes using OWL ontologies and SWRL rules. ( 0,830238585683537 )
AMIA Annu Symp Proc - Fostering Multilinguality in the UMLS: A Computational Approach to Terminology Expansion for Multiple Languages. ( 0,82734091846049 )
J Am Med Inform Assoc - A semantic-web oriented representation of the clinical element model for secondary use of electronic health records data. ( 0,821869589900893 )
J Biomed Inform - Cross-domain targeted ontology subsets for annotation: the case of SNOMED CORE and RxNorm. ( 0,820816130666735 )
Methods Inf Med - An evolutionary approach to realism-based adverse event representations. ( 0,818291094318773 )
Int J Med Inform - A modified Delphi translation strategy and challenges of International Classification for Nursing Practice (ICNP?). ( 0,818072113156001 )
AMIA Annu Symp Proc - Modeling and executing electronic health records driven phenotyping algorithms using the NQF Quality Data Model and JBoss? Drools Engine. ( 0,815930753637606 )
Telemed J E Health - Construction of a clinical decision support system for undergoing surgery based on domain ontology and rules reasoning. ( 0,815193026439269 )
Methods Inf Med - Evaluation of the content coverage of SNOMED CT representing ICNP seven-axis version 1 concepts. ( 0,814871201459499 )
J Biomed Inform - A query integrator and manager for the query web. ( 0,813570235178358 )
Artif Intell Med - A knowledge-driven approach to biomedical document conceptualization. ( 0,811560844473924 )
BMC Med Inform Decis Mak - Translating the Foundational Model of Anatomy into French using knowledge-based and lexical methods. ( 0,810173276746207 )
Artif Intell Med - The Foundational Model of Anatomy in OWL 2 and its use. ( 0,808899413218314 )
J Biomed Inform - Enabling international adoption of LOINC through translation. ( 0,803739481051769 )
AMIA Annu Symp Proc - Auditing SNOMED Integration into the UMLS for Duplicate Concepts. ( 0,79670774005317 )
J Biomed Inform - Terminology representation guidelines for biomedical ontologies in the semantic web notations. ( 0,79378544136434 )
J Biomed Inform - A methodology for extending domain coverage in SemRep. ( 0,792494705550166 )
J Am Med Inform Assoc - Scalable quality assurance for large SNOMED CT hierarchies using subject-based subtaxonomies. ( 0,791395799004411 )
J Biomed Inform - Semantic mappings and locality of nursing diagnostic concepts in UMLS. ( 0,789240532216502 )
J. Med. Internet Res. - Development of an obesity management ontology based on the nursing process for the mobile-device domain. ( 0,787917069990117 )
J Biomed Inform - Deriving a probabilistic syntacto-semantic grammar for biomedicine based on domain-specific terminologies. ( 0,78784474396112 )
AMIA Annu Symp Proc - Adapting a Clinical Data Repository to ICD-10-CM through the use of a Terminology Repository. ( 0,786607266179822 )
J Am Med Inform Assoc - Applying knowledge-anchored hypothesis discovery methods to advance clinical and translational research: the OAMiner project. ( 0,786437357819911 )
J Integr Bioinform - An ontology for description of drug discovery investigations. ( 0,785978760296056 )
J Biomed Inform - Enabling semantic similarity estimation across multiple ontologies: an evaluation in the biomedical domain. ( 0,785677903236847 )
AMIA Annu Symp Proc - Standardized mapping of nursing assessments across 59 U.S. military treatment facilities. ( 0,78466388438794 )
J Am Med Inform Assoc - Approaching semantic interoperability in Health Level Seven. ( 0,783660758411086 )
Methods Inf Med - Construction of an interface terminology on SNOMED CT. Generic approach and its application in intensive care. ( 0,780719107945827 )
Appl Clin Inform - An empiric analysis of omaha system targets. ( 0,779584874594268 )
J Biomed Inform - Translating standards into practice - one Semantic Web API for Gene Expression. ( 0,777803704983504 )
J Biomed Inform - BOAT: automatic alignment of biomedical ontologies using term informativeness and candidate selection. ( 0,776256526555577 )
J Biomed Inform - Using LOINC to link 10 terminology standards to one unified standard in a specialized domain. ( 0,774504001913737 )
AMIA Annu Symp Proc - Evaluation of RxNorm for Representing Ambulatory Prescriptions. ( 0,77152423622424 )
J Biomed Inform - Hematopoietic cell types: prototype for a revised cell ontology. ( 0,769235282654877 )
J Biomed Inform - Acquisition and evaluation of verb subcategorization resources for biomedicine. ( 0,767856437865633 )
J Biomed Inform - Validating the semantics of a medical iconic language using ontological reasoning. ( 0,766925653932695 )
J Biomed Inform - Formalizing MedDRA to support semantic reasoning on adverse drug reaction terms. ( 0,765364896187467 )
Methods Inf Med - An eligibility criteria query language for heterogeneous data warehouses. ( 0,765251122277558 )
Inform Health Soc Care - Semantics-driven modelling of user preferences for information retrieval in the biomedical domain. ( 0,762531898093402 )
J Biomed Inform - A network-theoretic approach for decompositional translation across Open Biological Ontologies. ( 0,762228964427757 )
J Biomed Inform - OntoVIP: an ontology for the annotation of object models used for medical image simulation. ( 0,761386384779555 )
J Biomed Inform - Semantic similarity estimation in the biomedical domain: an ontology-based information-theoretic perspective. ( 0,761320502373989 )
Brief. Bioinformatics - Semantic Web meets Integrative Biology: a survey. ( 0,760717108048825 )
J Am Med Inform Assoc - The National Center for Biomedical Ontology. ( 0,759627206478919 )
J Biomed Inform - TRAK ontology: defining standard care for the rehabilitation of knee conditions. ( 0,758225703583851 )
J Biomed Inform - NanoParticle Ontology for cancer nanotechnology research. ( 0,758166902505178 )
J Med Syst - Time-related patient data retrieval for the case studies from the pharmacogenomics research network. ( 0,756654830794115 )
J Biomed Inform - A graph-based recovery and decomposition of Swanson's hypothesis using semantic predications. ( 0,755046922406596 )
AMIA Annu Symp Proc - Towards the creation of a visual ontology of biomedical imaging entities. ( 0,754732942542846 )
AMIA Annu Symp Proc - An evaluation of the UMLS in representing corpus derived clinical concepts. ( 0,754577140467275 )
Methods Inf Med - Toward a view-oriented approach for aligning RDF-based biomedical repositories. ( 0,754439160609892 )
IEEE J Biomed Health Inform - Providing semantic interoperability between clinical care and clinical research domains. ( 0,753553855917899 )
Artif Intell Med - Terminological resources for text mining over biomedical scientific literature. ( 0,750853999174928 )
J Am Med Inform Assoc - Evaluating standard terminologies for encoding allergy information. ( 0,749837555006516 )
J Biomed Inform - COnto-Diff: generation of complex evolution mappings for life science ontologies. ( 0,74882795192524 )
J Biomed Inform - Comparing different knowledge sources for the automatic summarization of biomedical literature. ( 0,74881918305746 )
AMIA Annu Symp Proc - Assessing the performance of LOINC? and RadLex for coverage of CT scans across three sites in a health information exchange. ( 0,748763540988794 )
J Biomed Inform - Mapping Partners Master Drug Dictionary to RxNorm using an NLP-based approach. ( 0,748706335927252 )
BMC Med Inform Decis Mak - Determining correspondences between high-frequency MedDRA concepts and SNOMED: a case study. ( 0,747632052872805 )
Comput Methods Programs Biomed - BiOSS: A system for biomedical ontology selection. ( 0,746996093007847 )
J Biomed Inform - vSPARQL: a view definition language for the semantic web. ( 0,744792692830637 )
AMIA Annu Symp Proc - Quality assurance in LOINC using Description Logic. ( 0,74446571962274 )
J Biomed Inform - Using an ECG reference ontology for semantic interoperability of ECG data. ( 0,744312645927506 )
AMIA Annu Symp Proc - A family-based framework for supporting quality assurance of biomedical ontologies in BioPortal. ( 0,74367237298382 )
J Biomed Inform - OWL-based reasoning methods for validating archetypes. ( 0,743303903148933 )
Artif Intell Med - Intra-axiom redundancies in SNOMED CT. ( 0,741288576836449 )
J Med Syst - An ontological case base engineering methodology for diabetes management. ( 0,741134250337043 )
J Am Med Inform Assoc - An adaptable architecture for patient cohort identification from diverse data sources. ( 0,738549518564812 )
AMIA Annu Symp Proc - Integrating heterogeneous knowledge sources to acquire executable drug-related knowledge. ( 0,738543884739006 )
J Chem Inf Model - Setting the record straight: the origin of the pharmacophore concept. ( 0,736119865172994 )
Perspect Health Inf Manag - Personal health records: is rapid adoption hindering interoperability? ( 0,734889294143224 )
AMIA Annu Symp Proc - Using Medical Text Extraction, Reasoning and Mapping System (MTERMS) to process medication information in outpatient clinical notes. ( 0,73427052355145 )
J Biomed Inform - Development and evaluation of an ontology for guiding appropriate antibiotic prescribing. ( 0,732206904195275 )
J Biomed Inform - Understanding semantic mapping evolution by observing changes in biomedical ontologies. ( 0,732047367859506 )
AMIA Annu Symp Proc - Large-scale, Exhaustive Lattice-based Structural Auditing of SNOMED CT. ( 0,729008656331226 )
AMIA Annu Symp Proc - Modeling patient safety incidents knowledge with the Categorial Structure method. ( 0,728627705953739 )
AMIA Annu Symp Proc - Identifying Granularity Differences between Large Biomedical Ontologies through Rules. ( 0,728047896700748 )
Artif Intell Med - A semantic graph-based approach to biomedical summarisation. ( 0,726451709435086 )
Int J Med Inform - Using ontologies for structuring organizational knowledge in Home Care assistance. ( 0,726178310921945 )
Artif Intell Med - A four stage approach for ontology-based health information system design. ( 0,725119608650745 )
J Med Syst - Automated mapping of clinical terms into SNOMED-CT. An application to codify procedures in pathology. ( 0,72485388039726 )
AMIA Annu Symp Proc - Representation of nursing terminologies in UMLS. ( 0,723954099500871 )
Comput Methods Programs Biomed - Searching biosignal databases by content and context: Research Oriented Integration System for ECG Signals (ROISES). ( 0,723826811403755 )
AMIA Annu Symp Proc - Applying Evolutionary Terminology Auditing to SNOMED CT. ( 0,723738630370227 )
AMIA Annu Symp Proc - Reasoning based quality assurance of medical ontologies: a case study. ( 0,722964699029011 )
Methods Inf Med - Putting biomedical ontologies to work. ( 0,722797230337801 )
AMIA Annu Symp Proc - Metonymies in medical terminologies. A SNOMED CT case study. ( 0,721870483097216 )
Methods Inf Med - Formative evaluation of ontology learning methods for entity discovery by using existing ontologies as reference standards. ( 0,720895962957867 )
AMIA Annu Symp Proc - Design and evaluation of a bacterial clinical infectious diseases ontology. ( 0,720380632902974 )
J Biomed Inform - Cross-product extensions of the Gene Ontology. ( 0,719316904623107 )