J Biomed Inform - TRAK ontology: defining standard care for the rehabilitation of knee conditions.

Tópicos

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Resumo

In this paper we discuss the design and development of TRAK (Taxonomy for RehAbilitation of Knee conditions), an ontology that formally models information relevant for the rehabilitation of knee conditions. TRAK provides the framework that can be used to collect coded data in sufficient detail to support epidemiologic studies so that the most effective treatment components can be identified, new interventions developed and the quality of future randomized control trials improved to incorporate a control intervention that is well defined and reflects clinical practice. TRAK follows design principles recommended by the Open Biomedical Ontologies (OBO) Foundry. TRAK uses the Basic Formal Ontology (BFO) as the upper-level ontology and refers to other relevant ontologies such as Information Artifact Ontology (IAO), Ontology for General Medical Science (OGMS) and Phenotype And Trait Ontology (PATO). TRAK is orthogonal to other bio-ontologies and represents domain-specific knowledge about treatments and modalities used in rehabilitation of knee conditions. Definitions of typical exercises used as treatment modalities are supported with appropriate illustrations, which can be viewed in the OBO-Edit ontology editor. The vast majority of other classes in TRAK are cross-referenced to the Unified Medical Language System (UMLS) to facilitate future integration with other terminological sources. TRAK is implemented in OBO, a format widely used by the OBO community. TRAK is available for download from http://www.cs.cf.ac.uk/trak. In addition, its public release can be accessed through BioPortal, where it can be browsed, searched and visualized.

Resumo Limpo

paper discuss design develop trak taxonomi rehabilit knee condit ontolog formal model inform relev rehabilit knee condit trak provid framework can use collect code data suffici detail support epidemiolog studi effect treatment compon can identifi new intervent develop qualiti futur random control trial improv incorpor control intervent well defin reflect clinic practic trak follow design principl recommend open biomed ontolog obo foundri trak use basic formal ontolog bfo upperlevel ontolog refer relev ontolog inform artifact ontolog iao ontolog general medic scienc ogm phenotyp trait ontolog pato trak orthogon bioontolog repres domainspecif knowledg treatment modal use rehabilit knee condit definit typic exercis use treatment modal support appropri illustr can view oboedit ontolog editor vast major class trak crossreferenc unifi medic languag system uml facilit futur integr terminolog sourc trak implement obo format wide use obo communiti trak avail download httpwwwcscfacuktrak addit public releas can access bioport can brows search visual

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