Artif Intell Med - Temporal abstraction and temporal Bayesian networks in clinical domains: a survey.


{ concept(1167) ontolog(924) domain(897) }
{ record(1888) medic(1808) patient(1693) }
{ control(1307) perform(991) simul(935) }
{ can(774) often(719) complex(702) }
{ network(2748) neural(1063) input(814) }
{ estim(2440) model(1874) function(577) }
{ design(1359) user(1324) use(1319) }
{ survey(1388) particip(1329) question(1065) }
{ framework(1458) process(801) describ(734) }
{ visual(1396) interact(850) tool(830) }
{ model(2656) set(1616) predict(1553) }
{ group(2977) signific(1463) compar(1072) }
{ activ(1452) weight(1219) physic(1104) }
{ state(1844) use(1261) util(961) }
{ model(3404) distribut(989) bayesian(671) }
{ patient(2315) diseas(1263) diabet(1191) }
{ data(1714) softwar(1251) tool(1186) }
{ studi(2440) review(1878) systemat(933) }
{ method(984) reconstruct(947) comput(926) }
{ system(1050) medic(1026) inform(1018) }
{ spatial(1525) area(1432) region(1030) }
{ signal(2180) analysi(812) frequenc(800) }
{ studi(1410) differ(1259) use(1210) }
{ model(3480) simul(1196) paramet(876) }
{ data(1737) use(1416) pattern(1282) }
{ sequenc(1873) structur(1644) protein(1328) }
{ featur(3375) classif(2383) classifi(1994) }
{ problem(2511) optim(1539) algorithm(950) }
{ chang(1828) time(1643) increas(1301) }
{ case(1353) use(1143) diagnosi(1136) }
{ howev(809) still(633) remain(590) }
{ data(3963) clinic(1234) research(1004) }
{ compound(1573) activ(1297) structur(1058) }
{ medic(1828) order(1363) alert(1069) }
{ analysi(2126) use(1163) compon(1037) }
{ cancer(2502) breast(956) screen(824) }
{ bind(1733) structur(1185) ligand(1036) }
{ motion(1329) object(1292) video(1091) }
{ algorithm(1844) comput(1787) effici(935) }
{ general(901) number(790) one(736) }
{ search(2224) databas(1162) retriev(909) }
{ featur(1941) imag(1645) propos(1176) }
{ monitor(1329) mobil(1314) devic(1160) }
{ time(1939) patient(1703) rate(768) }
{ use(2086) technolog(871) perceiv(783) }
{ structur(1116) can(940) graph(676) }
{ implement(1333) system(1263) develop(1122) }
{ method(2212) result(1239) propos(1039) }
{ imag(1947) propos(1133) code(1026) }
{ inform(2794) health(2639) internet(1427) }
{ system(1976) rule(880) can(841) }
{ measur(2081) correl(1212) valu(896) }
{ imag(1057) registr(996) error(939) }
{ method(1219) similar(1157) match(930) }
{ imag(2830) propos(1344) filter(1198) }
{ imag(2675) segment(2577) method(1081) }
{ take(945) account(800) differ(722) }
{ assess(1506) score(1403) qualiti(1306) }
{ treatment(1704) effect(941) patient(846) }
{ surgeri(1148) surgic(1085) robot(1054) }
{ error(1145) method(1030) estim(1020) }
{ learn(2355) train(1041) set(1003) }
{ clinic(1479) use(1117) guidelin(835) }
{ extract(1171) text(1153) clinic(932) }
{ method(1557) propos(1049) approach(1037) }
{ model(2220) cell(1177) simul(1124) }
{ care(1570) inform(1187) nurs(1089) }
{ risk(3053) factor(974) diseas(938) }
{ perform(999) metric(946) measur(919) }
{ research(1085) discuss(1038) issu(1018) }
{ import(1318) role(1303) understand(862) }
{ model(2341) predict(2261) use(1141) }
{ perform(1367) use(1326) method(1137) }
{ studi(1119) effect(1106) posit(819) }
{ blood(1257) pressur(1144) flow(957) }
{ health(3367) inform(1360) care(1135) }
{ ehr(2073) health(1662) electron(1139) }
{ research(1218) medic(880) student(794) }
{ patient(2837) hospit(1953) medic(668) }
{ data(2317) use(1299) case(1017) }
{ age(1611) year(1155) adult(843) }
{ cost(1906) reduc(1198) effect(832) }
{ sampl(1606) size(1419) use(1276) }
{ gene(2352) biolog(1181) express(1162) }
{ data(3008) multipl(1320) sourc(1022) }
{ first(2504) two(1366) second(1323) }
{ intervent(3218) particip(2042) group(1664) }
{ activ(1138) subject(705) human(624) }
{ patient(1821) servic(1111) care(1106) }
{ can(981) present(881) function(850) }
{ health(1844) social(1437) communiti(874) }
{ high(1669) rate(1365) level(1280) }
{ use(976) code(926) identifi(902) }
{ use(1733) differ(960) four(931) }
{ drug(1928) target(777) effect(648) }
{ result(1111) use(1088) new(759) }
{ decis(3086) make(1611) patient(1517) }
{ process(1125) use(805) approach(778) }
{ method(1969) cluster(1462) data(1082) }
{ detect(2391) sensit(1101) algorithm(908) }


JECTIVES: Temporal abstraction (TA) of clinical data aims to abstract and interpret clinical data into meaningful higher-level interval concepts. Abstracted concepts are used for diagnostic, prediction and therapy planning purposes. On the other hand, temporal Bayesian networks (TBNs) are temporal extensions of the known probabilistic graphical models, Bayesian networks. TBNs can represent temporal relationships between events and their state changes, or the evolution of a process, through time. This paper offers a survey on techniques/methods from these two areas that were used independently in many clinical domains (e.g. diabetes, hepatitis, cancer) for various clinical tasks (e.g. diagnosis, prognosis). A main objective of this survey, in addition to presenting the key aspects of TA and TBNs, is to point out important benefits from a potential integration of TA and TBNs in medical domains and tasks. The motivation for integrating these two areas is their complementary function: TA provides clinicians with high level views of data while TBNs serve as a knowledge representation and reasoning tool under uncertainty, which is inherent in all clinical tasks.METHODS: Key publications from these two areas of relevance to clinical systems, mainly circumscribed to the latest two decades, are reviewed and classified. TA techniques are compared on the basis of: (a) knowledge acquisition and representation for deriving TA concepts and (b) methodology for deriving basic and complex temporal abstractions. TBNs are compared on the basis of: (a) representation of time, (b) knowledge representation and acquisition, (c) inference methods and the computational demands of the network, and (d) their applications in medicine.RESULTS: The survey performs an extensive comparative analysis to illustrate the separate merits and limitations of various TA and TBN techniques used in clinical systems with the purpose of anticipating potential gains through an integration of the two techniques, thus leading to a unified methodology for clinical systems. The surveyed contributions are evaluated using frameworks of respective key features. In addition, for the evaluation of TBN methods, a unifying clinical domain (diabetes) is used.CONCLUSION: The main conclusion transpiring from this review is that techniques/methods from these two areas, that so far are being largely used independently of each other in clinical domains, could be effectively integrated in the context of medical decision-support systems. The anticipated key benefits of the perceived integration are: (a) during problem solving, the reasoning can be directed at different levels of temporal and/or conceptual abstractions since the nodes of the TBNs can be complex entities, temporally and structurally and (b) during model building, knowledge generated in the form of basic and/or complex abstractions, can be deployed in a TBN.

Resumo Limpo

jectiv tempor abstract ta clinic data aim abstract interpret clinic data meaning higherlevel interv concept abstract concept use diagnost predict therapi plan purpos hand tempor bayesian network tbns tempor extens known probabilist graphic model bayesian network tbns can repres tempor relationship event state chang evolut process time paper offer survey techniquesmethod two area use independ mani clinic domain eg diabet hepat cancer various clinic task eg diagnosi prognosi main object survey addit present key aspect ta tbns point import benefit potenti integr ta tbns medic domain task motiv integr two area complementari function ta provid clinician high level view data tbns serv knowledg represent reason tool uncertainti inher clinic tasksmethod key public two area relev clinic system main circumscrib latest two decad review classifi ta techniqu compar basi knowledg acquisit represent deriv ta concept b methodolog deriv basic complex tempor abstract tbns compar basi represent time b knowledg represent acquisit c infer method comput demand network d applic medicineresult survey perform extens compar analysi illustr separ merit limit various ta tbn techniqu use clinic system purpos anticip potenti gain integr two techniqu thus lead unifi methodolog clinic system survey contribut evalu use framework respect key featur addit evalu tbn method unifi clinic domain diabet usedconclus main conclus transpir review techniquesmethod two area far larg use independ clinic domain effect integr context medic decisionsupport system anticip key benefit perceiv integr problem solv reason can direct differ level tempor andor conceptu abstract sinc node tbns can complex entiti tempor structur b model build knowledg generat form basic andor complex abstract can deploy tbn

Resumos Similares

Appl Clin Inform - Ontology content patterns as bridge for the semantic representation of clinical information. ( 0,755402122161777 )
J Biomed Inform - A query integrator and manager for the query web. ( 0,741970059012176 )
BMC Med Inform Decis Mak - Determining correspondences between high-frequency MedDRA concepts and SNOMED: a case study. ( 0,712694942460075 )
J Am Med Inform Assoc - A semantic-web oriented representation of the clinical element model for secondary use of electronic health records data. ( 0,700887100015884 )
Neural Comput - The evolution of representation in simple cognitive networks. ( 0,698402216880609 )
Artif Intell Med - The Foundational Model of Anatomy in OWL 2 and its use. ( 0,688887038598963 )
J Am Med Inform Assoc - Life sciences domain analysis model. ( 0,687499585937377 )
Methods Inf Med - Evaluation of the content coverage of SNOMED CT representing ICNP seven-axis version 1 concepts. ( 0,680986336817755 )
Int J Med Inform - A modified Delphi translation strategy and challenges of International Classification for Nursing Practice (ICNP?). ( 0,680118867754172 )
Methods Inf Med - An evolutionary approach to realism-based adverse event representations. ( 0,679493941562125 )
J Biomed Inform - Integrating reasoning and clinical archetypes using OWL ontologies and SWRL rules. ( 0,67933413951082 )
BMC Med Inform Decis Mak - Querying phenotype-genotype relationships on patient datasets using semantic web technology: the example of Cerebrotendinous xanthomatosis. ( 0,677707816858726 )
J Biomed Inform - Natural Language Processing methods and systems for biomedical ontology learning. ( 0,677702416174958 )
J Biomed Inform - Semantic concept-enriched dependence model for medical information retrieval. ( 0,671026772536074 )
Methods Inf Med - An eligibility criteria query language for heterogeneous data warehouses. ( 0,670162544958953 )
J Chem Inf Model - Setting the record straight: the origin of the pharmacophore concept. ( 0,669445352025072 )
J Biomed Inform - A federated semantic metadata registry framework for enabling interoperability across clinical research and care domains. ( 0,669392997648316 )
AMIA Annu Symp Proc - Deriving an abstraction network to support quality assurance in OCRe. ( 0,666374781085814 )
BMC Med Inform Decis Mak - Retrospective checking of compliance with practice guidelines for acute stroke care: a novel experiment using openEHR's Guideline Definition Language. ( 0,663787102368697 )
Inform Health Soc Care - Semantics-driven modelling of user preferences for information retrieval in the biomedical domain. ( 0,662577141033706 )
J Biomed Inform - Reuse of termino-ontological resources and text corpora for building a multilingual domain ontology: an application to Alzheimer's disease. ( 0,658227582303349 )
AMIA Annu Symp Proc - Modeling and executing electronic health records driven phenotyping algorithms using the NQF Quality Data Model and JBoss? Drools Engine. ( 0,655807430724361 )
J Biomed Inform - Abstraction of complex concepts with a refined partial-area taxonomy of SNOMED. ( 0,652241305344645 )
Int J Med Inform - Implications of SNOMED CT versioning. ( 0,651964553476629 )
J Am Med Inform Assoc - Scalable quality assurance for large SNOMED CT hierarchies using subject-based subtaxonomies. ( 0,651941645914696 )
J Biomed Inform - Enabling international adoption of LOINC through translation. ( 0,649190408910787 )
Comput Methods Programs Biomed - BiOSS: A system for biomedical ontology selection. ( 0,648346086333 )
Int J Med Inform - Using ontologies for structuring organizational knowledge in Home Care assistance. ( 0,644732215277455 )
J Biomed Inform - Measuring the level of activity in community built bio-ontologies. ( 0,64464981313736 )
Int J Med Inform - Clinical modeling--a critical analysis. ( 0,643567593632842 )
J. Med. Internet Res. - Development of an obesity management ontology based on the nursing process for the mobile-device domain. ( 0,642805497644148 )
Methods Inf Med - Construction of an interface terminology on SNOMED CT. Generic approach and its application in intensive care. ( 0,642508576328897 )
J Biomed Inform - An ontology-based measure to compute semantic similarity in biomedicine. ( 0,641066588464529 )
J Biomed Inform - OntoVIP: an ontology for the annotation of object models used for medical image simulation. ( 0,640978143176398 )
IEEE J Biomed Health Inform - Exploiting Semantic Web Technologies to Develop OWL-Based Clinical Practice Guideline Execution Engines. ( 0,638831102153928 )
J Biomed Inform - A framework for unifying ontology-based semantic similarity measures: a study in the biomedical domain. ( 0,638284982786668 )
J Biomed Inform - Semantic mappings and locality of nursing diagnostic concepts in UMLS. ( 0,638213336635457 )
Int J Med Inform - Semantic similarity-based alignment between clinical archetypes and SNOMED CT: an application to observations. ( 0,63784505830728 )
AMIA Annu Symp Proc - Fostering Multilinguality in the UMLS: A Computational Approach to Terminology Expansion for Multiple Languages. ( 0,637647829905689 )
J Biomed Inform - TRAK ontology: defining standard care for the rehabilitation of knee conditions. ( 0,637273887448218 )
IEEE J Biomed Health Inform - Designing an architecture for monitoring patients at home: ontologies and web services for clinical and technical management integration. ( 0,634619029168275 )
J Biomed Inform - NanoParticle Ontology for cancer nanotechnology research. ( 0,634529080042403 )
J Med Syst - Time-related patient data retrieval for the case studies from the pharmacogenomics research network. ( 0,634270367297463 )
J Integr Bioinform - UBioLab: a web-laboratory for ubiquitous in-silico experiments. ( 0,633306279945596 )
J Biomed Inform - Using LOINC to link 10 terminology standards to one unified standard in a specialized domain. ( 0,63321619255702 )
Artif Intell Med - A four stage approach for ontology-based health information system design. ( 0,632958176286354 )
J Biomed Inform - Enabling semantic similarity estimation across multiple ontologies: an evaluation in the biomedical domain. ( 0,632108881567393 )
Methods Inf Med - Biomedical ontologies: toward scientific debate. ( 0,631641594044831 )
J Biomed Inform - Hematopoietic cell types: prototype for a revised cell ontology. ( 0,631593135869655 )
J Biomed Inform - Using an ECG reference ontology for semantic interoperability of ECG data. ( 0,630883487181528 )
J Biomed Inform - Validating the semantics of a medical iconic language using ontological reasoning. ( 0,628903804871067 )
Comput. Biol. Med. - An ontology of cancer therapies supporting interoperability and data consistency in EPRs. ( 0,628536667147775 )
J Biomed Inform - A methodology for extending domain coverage in SemRep. ( 0,628422085549463 )
AMIA Annu Symp Proc - A family-based framework for supporting quality assurance of biomedical ontologies in BioPortal. ( 0,62827507383029 )
AMIA Annu Symp Proc - Modeling patient safety incidents knowledge with the Categorial Structure method. ( 0,627949721914543 )
AMIA Annu Symp Proc - Standardized mapping of nursing assessments across 59 U.S. military treatment facilities. ( 0,627808316192144 )
J Med Syst - An adaptive semantic based mediation system for data interoperability among Health Information Systems. ( 0,624654271048254 )
AMIA Annu Symp Proc - Combining infobuttons and semantic web rules for identifying patterns and delivering highly-personalized education materials. ( 0,622777135496137 )
J Biomed Inform - OWL-based reasoning methods for validating archetypes. ( 0,62273460998006 )
AMIA Annu Symp Proc - Applying Evolutionary Terminology Auditing to SNOMED CT. ( 0,621051963439366 )
J Am Med Inform Assoc - Applying knowledge-anchored hypothesis discovery methods to advance clinical and translational research: the OAMiner project. ( 0,620406940909954 )
Comput Methods Programs Biomed - Searching biosignal databases by content and context: Research Oriented Integration System for ECG Signals (ROISES). ( 0,619250472478258 )
AMIA Annu Symp Proc - Evaluation of RxNorm for Representing Ambulatory Prescriptions. ( 0,617895056033512 )
BMC Med Inform Decis Mak - Translating the Foundational Model of Anatomy into French using knowledge-based and lexical methods. ( 0,616649418921282 )
AMIA Annu Symp Proc - New abstraction networks and a new visualization tool in support of auditing the SNOMED CT content. ( 0,616645262736615 )
AMIA Annu Symp Proc - Comparative analysis of the VA/Kaiser and NLM CORE problem subsets: an empirical study based on problem frequency. ( 0,616498146949444 )
Methods Inf Med - Toward a view-oriented approach for aligning RDF-based biomedical repositories. ( 0,61506053267941 )
AMIA Annu Symp Proc - Auditing SNOMED Integration into the UMLS for Duplicate Concepts. ( 0,61496130409658 )
Appl Clin Inform - An empiric analysis of omaha system targets. ( 0,614015758790668 )
J Biomed Inform - BOAT: automatic alignment of biomedical ontologies using term informativeness and candidate selection. ( 0,613157601104061 )
J Am Med Inform Assoc - Evaluating standard terminologies for encoding allergy information. ( 0,612353284394459 )
AMIA Annu Symp Proc - Representation of nursing terminologies in UMLS. ( 0,611373106603176 )
Int J Med Inform - Towards an ontology for data quality in integrated chronic disease management: a realist review of the literature. ( 0,610178513724362 )
Brief. Bioinformatics - Semantic Web meets Integrative Biology: a survey. ( 0,609047326326048 )
IEEE Trans Image Process - Semantic-gap-oriented active learning for multilabel image annotation. ( 0,608144620883826 )
Artif Intell Med - Visually defining and querying consistent multi-granular clinical temporal abstractions. ( 0,607622767732623 )
IEEE J Biomed Health Inform - Providing semantic interoperability between clinical care and clinical research domains. ( 0,606837502933366 )
J Biomed Inform - A domain analysis model for eIRB systems: addressing the weak link in clinical research informatics. ( 0,606727894615922 )
J Biomed Inform - Development and evaluation of an ontology for guiding appropriate antibiotic prescribing. ( 0,605916214199415 )
Telemed J E Health - Construction of a clinical decision support system for undergoing surgery based on domain ontology and rules reasoning. ( 0,604825431494917 )
AMIA Annu Symp Proc - Reasoning based quality assurance of medical ontologies: a case study. ( 0,602627196361846 )
Methods Inf Med - Architectural approach to eHealth for enabling paradigm changes in health. ( 0,601777770698722 )
J Am Med Inform Assoc - Unified Medical Language System term occurrences in clinical notes: a large-scale corpus analysis. ( 0,601419628443136 )
AMIA Annu Symp Proc - An empirically derived taxonomy of errors in SNOMED CT. ( 0,599697006995139 )
AMIA Annu Symp Proc - Technical architecture of ONC-approved plans for statewide health information exchange. ( 0,598492244083248 )
Artif Intell Med - Intra-axiom redundancies in SNOMED CT. ( 0,598485319506565 )
J Integr Bioinform - An ontology for description of drug discovery investigations. ( 0,596504179416519 )
AMIA Annu Symp Proc - Statistical machine translation for biomedical text: are we there yet? ( 0,596300750754833 )
J Biomed Inform - vSPARQL: a view definition language for the semantic web. ( 0,593023152125717 )
J Med Syst - An approach for building a personal health information system using conceptual domain knowledge. ( 0,592574174949094 )
Int J Med Inform - Applying the archetype approach to the database of a biobank information management system. ( 0,592364913666768 )
J Am Med Inform Assoc - Approaching semantic interoperability in Health Level Seven. ( 0,590140123776493 )
AMIA Annu Symp Proc - Towards the creation of a visual ontology of biomedical imaging entities. ( 0,58985204001691 )
AMIA Annu Symp Proc - Mapping ASTI patient's therapeutic-data model to virtual Medical Record: can VMR represent therapeutic data elements used by ASTI in clinical guideline implementations? ( 0,588460093926025 )
Med Biol Eng Comput - Evidence-based approach to the maintenance of laboratory and medical equipment in resource-poor settings. ( 0,588354282091456 )
J Biomed Inform - Semantic mapping to simplify deployment of HL7 v3 Clinical Document Architecture. ( 0,5869483633898 )
AMIA Annu Symp Proc - Can SNOMED CT fulfill the vision of a compositional terminology? Analyzing the use case for problem list. ( 0,584790767785918 )
AMIA Annu Symp Proc - Quality assurance in LOINC using Description Logic. ( 0,584740806689649 )
Perspect Health Inf Manag - Personal health records: is rapid adoption hindering interoperability? ( 0,583687118627343 )
AMIA Annu Symp Proc - MiDas: automatic extraction of a common domain of discourse in sleep medicine for multi-center data integration. ( 0,583295216556047 )