J Integr Bioinform - A query suggestion workflow for life science IR-systems.

Tópicos

{ search(2224) databas(1162) retriev(909) }
{ case(1353) use(1143) diagnosi(1136) }
{ visual(1396) interact(850) tool(830) }
{ process(1125) use(805) approach(778) }
{ care(1570) inform(1187) nurs(1089) }
{ studi(1119) effect(1106) posit(819) }
{ record(1888) medic(1808) patient(1693) }
{ cost(1906) reduc(1198) effect(832) }
{ decis(3086) make(1611) patient(1517) }
{ inform(2794) health(2639) internet(1427) }
{ concept(1167) ontolog(924) domain(897) }
{ import(1318) role(1303) understand(862) }
{ high(1669) rate(1365) level(1280) }
{ data(1737) use(1416) pattern(1282) }
{ imag(2675) segment(2577) method(1081) }
{ framework(1458) process(801) describ(734) }
{ data(1714) softwar(1251) tool(1186) }
{ general(901) number(790) one(736) }
{ howev(809) still(633) remain(590) }
{ model(3480) simul(1196) paramet(876) }
{ implement(1333) system(1263) develop(1122) }
{ method(1219) similar(1157) match(930) }
{ assess(1506) score(1403) qualiti(1306) }
{ algorithm(1844) comput(1787) effici(935) }
{ design(1359) user(1324) use(1319) }
{ featur(1941) imag(1645) propos(1176) }
{ data(3963) clinic(1234) research(1004) }
{ system(1050) medic(1026) inform(1018) }
{ perform(1367) use(1326) method(1137) }
{ spatial(1525) area(1432) region(1030) }
{ data(2317) use(1299) case(1017) }
{ age(1611) year(1155) adult(843) }
{ gene(2352) biolog(1181) express(1162) }
{ analysi(2126) use(1163) compon(1037) }
{ result(1111) use(1088) new(759) }
{ method(1969) cluster(1462) data(1082) }
{ detect(2391) sensit(1101) algorithm(908) }
{ model(3404) distribut(989) bayesian(671) }
{ can(774) often(719) complex(702) }
{ imag(1947) propos(1133) code(1026) }
{ system(1976) rule(880) can(841) }
{ measur(2081) correl(1212) valu(896) }
{ imag(1057) registr(996) error(939) }
{ bind(1733) structur(1185) ligand(1036) }
{ sequenc(1873) structur(1644) protein(1328) }
{ featur(3375) classif(2383) classifi(1994) }
{ imag(2830) propos(1344) filter(1198) }
{ network(2748) neural(1063) input(814) }
{ patient(2315) diseas(1263) diabet(1191) }
{ take(945) account(800) differ(722) }
{ studi(2440) review(1878) systemat(933) }
{ motion(1329) object(1292) video(1091) }
{ treatment(1704) effect(941) patient(846) }
{ surgeri(1148) surgic(1085) robot(1054) }
{ problem(2511) optim(1539) algorithm(950) }
{ error(1145) method(1030) estim(1020) }
{ chang(1828) time(1643) increas(1301) }
{ learn(2355) train(1041) set(1003) }
{ clinic(1479) use(1117) guidelin(835) }
{ extract(1171) text(1153) clinic(932) }
{ method(1557) propos(1049) approach(1037) }
{ control(1307) perform(991) simul(935) }
{ model(2220) cell(1177) simul(1124) }
{ method(984) reconstruct(947) comput(926) }
{ studi(1410) differ(1259) use(1210) }
{ risk(3053) factor(974) diseas(938) }
{ perform(999) metric(946) measur(919) }
{ research(1085) discuss(1038) issu(1018) }
{ model(2341) predict(2261) use(1141) }
{ compound(1573) activ(1297) structur(1058) }
{ blood(1257) pressur(1144) flow(957) }
{ health(3367) inform(1360) care(1135) }
{ monitor(1329) mobil(1314) devic(1160) }
{ ehr(2073) health(1662) electron(1139) }
{ state(1844) use(1261) util(961) }
{ research(1218) medic(880) student(794) }
{ patient(2837) hospit(1953) medic(668) }
{ model(2656) set(1616) predict(1553) }
{ medic(1828) order(1363) alert(1069) }
{ signal(2180) analysi(812) frequenc(800) }
{ group(2977) signific(1463) compar(1072) }
{ sampl(1606) size(1419) use(1276) }
{ data(3008) multipl(1320) sourc(1022) }
{ first(2504) two(1366) second(1323) }
{ intervent(3218) particip(2042) group(1664) }
{ activ(1138) subject(705) human(624) }
{ time(1939) patient(1703) rate(768) }
{ patient(1821) servic(1111) care(1106) }
{ use(2086) technolog(871) perceiv(783) }
{ can(981) present(881) function(850) }
{ health(1844) social(1437) communiti(874) }
{ structur(1116) can(940) graph(676) }
{ cancer(2502) breast(956) screen(824) }
{ use(976) code(926) identifi(902) }
{ use(1733) differ(960) four(931) }
{ drug(1928) target(777) effect(648) }
{ survey(1388) particip(1329) question(1065) }
{ estim(2440) model(1874) function(577) }
{ activ(1452) weight(1219) physic(1104) }
{ method(2212) result(1239) propos(1039) }

Resumo

Information Retrieval (IR) plays a central role in the exploration and interpretation of integrated biological datasets that represent the heterogeneous ecosystem of life sciences. Here, keyword based query systems are popular user interfaces. In turn, to a large extend, the used query phrases determine the quality of the search result and the effort a scientist has to invest for query refinement. In this context, computer aided query expansion and suggestion is one of the most challenging tasks for life science information systems. Existing query front-ends support aspects like spelling correction, query refinement or query expansion. However, the majority of the front-ends only make limited use of enhanced IR algorithms to implement comprehensive and computer aided query refinement workflows. In this work, we present the design of a multi-stage query suggestion workflow and its implementation in the life science IR system LAILAPS. The presented workflow includes enhanced tokenisation, word breaking, spelling correction, query expansion and query suggestion ranking. A spelling correction benchmark with 5,401 queries and manually selected use cases for query expansion demonstrate the performance of the implemented workflow and its advantages compared with state-of-the-art systems.

Resumo Limpo

inform retriev ir play central role explor interpret integr biolog dataset repres heterogen ecosystem life scienc keyword base queri system popular user interfac turn larg extend use queri phrase determin qualiti search result effort scientist invest queri refin context comput aid queri expans suggest one challeng task life scienc inform system exist queri frontend support aspect like spell correct queri refin queri expans howev major frontend make limit use enhanc ir algorithm implement comprehens comput aid queri refin workflow work present design multistag queri suggest workflow implement life scienc ir system lailap present workflow includ enhanc tokenis word break spell correct queri expans queri suggest rank spell correct benchmark queri manual select use case queri expans demonstr perform implement workflow advantag compar stateoftheart system

Resumos Similares

J Am Med Inform Assoc - Search filters to identify geriatric medicine in Medline. ( 0,851532548376644 )
J Am Med Inform Assoc - MEDLINE clinical queries are robust when searching in recent publishing years. ( 0,846877035550976 )
J. Med. Internet Res. - Development and validation of filters for the retrieval of studies of clinical examination from Medline. ( 0,842966542633337 )
AMIA Annu Symp Proc - Search filter precision can be improved by NOTing out irrelevant content. ( 0,837464861949476 )
J. Med. Internet Res. - Retrieving clinical evidence: a comparison of PubMed and Google Scholar for quick clinical searches. ( 0,823414136264891 )
J Integr Bioinform - The LAILAPS search engine: relevance ranking in life science databases. ( 0,818182919663446 )
Telemed J E Health - MEDLINE versus EMBASE and CINAHL for telemedicine searches. ( 0,806401683021594 )
J. Med. Internet Res. - Sensitivity and predictive value of 15 PubMed search strategies to answer clinical questions rated against full systematic reviews. ( 0,803137395019743 )
Health Info Libr J - Medical literature searches: a comparison of PubMed and Google Scholar. ( 0,801781275189417 )
Health Info Libr J - Facilitating access to evidence: Primary Health Care Search Filter. ( 0,801057001680002 )
Methods Inf Med - Learning the preferences of physicians for the organization of result lists of medical evidence articles. ( 0,79705369690188 )
BMC Med Inform Decis Mak - Glomerular disease search filters for Pubmed, Ovid Medline, and Embase: a development and validation study. ( 0,795418863140109 )
Health Info Libr J - Assessment of indexing trends with specific and general terms for herbal medicine. ( 0,794356525692037 )
J Biomed Inform - On the query reformulation technique for effective MEDLINE document retrieval. ( 0,793421344510237 )
J Am Med Inform Assoc - Retrieval of diagnostic and treatment studies for clinical use through PubMed and PubMed's Clinical Queries filters. ( 0,792452664024385 )
J Integr Bioinform - The LAILAPS search engine: a feature model for relevance ranking in life science databases. ( 0,791846058678399 )
BMC Med Inform Decis Mak - Boolean versus ranked querying for biomedical systematic reviews. ( 0,785990679087655 )
J Telemed Telecare - How to improve your PubMed/MEDLINE searches: 1. background and basic searching. ( 0,78536864579864 )
J. Med. Internet Res. - Definition of Health 2.0 and Medicine 2.0: a systematic review. ( 0,780966026403243 )
J Integr Bioinform - Classification methods for finding articles describing protein-protein interactions in PubMed. ( 0,78028128316769 )
BMC Med Inform Decis Mak - Publication trends of shared decision making in 15 high impact medical journals: a full-text review with bibliometric analysis. ( 0,780239086471713 )
AMIA Annu Symp Proc - Evaluation of automated term groupings for detecting anaphylactic shock signals for drugs. ( 0,78023017610187 )
J Biomed Inform - MeSHy: Mining unanticipated PubMed information using frequencies of occurrences and concurrences of MeSH terms. ( 0,778618009707704 )
Health Info Libr J - Searching for randomised controlled trials and clinical controlled trials in Thai online bibliographical biomedical databases. ( 0,77645579557528 )
J Am Med Inform Assoc - Search terms and a validated brief search filter to retrieve publications on health-related values in Medline: a word frequency analysis study. ( 0,768823795118144 )
Int J Health Geogr - HEALTH GeoJunction: place-time-concept browsing of health publications. ( 0,766322715334803 )
Health Info Libr J - Developing a geographic search filter to identify randomised controlled trials in Africa: finding the optimal balance between sensitivity and precision. ( 0,76383004083832 )
Int J Med Inform - MEDRank: using graph-based concept ranking to index biomedical texts. ( 0,761694635189091 )
J. Med. Internet Res. - A search engine to access PubMed monolingual subsets: proof of concept and evaluation in French. ( 0,755359979664344 )
IEEE Trans Vis Comput Graph - WORDGRAPH: Keyword-in-Context Visualization for NETSPEAK's Wildcard Search. ( 0,7497692693596 )
J Am Med Inform Assoc - Automatically extracting sentences from Medline citations to support clinicians' information needs. ( 0,746566710609213 )
J Biomed Inform - Reflective random indexing for semi-automatic indexing of the biomedical literature. ( 0,746341150783109 )
Health Info Libr J - The performance of adverse effects search filters in MEDLINE and EMBASE. ( 0,744912918872056 )
Health Info Libr J - Utilisation of search filters in systematic reviews of prognosis questions. ( 0,744818702826641 )
J Biomed Inform - Using statistical text mining to supplement the development of an ontology. ( 0,743810920468569 )
AMIA Annu Symp Proc - Does query expansion limit our learning? A comparison of social-based expansion to content-based expansion for medical queries on the internet. ( 0,741240654172814 )
BMC Med Inform Decis Mak - CDAPubMed: a browser extension to retrieve EHR-based biomedical literature. ( 0,739578051907561 )
J Biomed Inform - Development and evaluation of a biomedical search engine using a predicate-based vector space model. ( 0,737290775174095 )
J. Med. Internet Res. - Using Internet search engines to obtain medical information: a comparative study. ( 0,736228433480514 )
Int J Med Inform - An analysis of clinical queries in an electronic health record search utility. ( 0,733655683581166 )
AMIA Annu Symp Proc - BIOSPIDA: A Relational Database Translator for NCBI. ( 0,733598026574078 )
Health Info Libr J - Sensitivity and precision of adverse effects search filters in MEDLINE and EMBASE: a case study of fractures with thiazolidinediones. ( 0,731991663014889 )
J Am Med Inform Assoc - A practical approach to achieve private medical record linkage in light of public resources. ( 0,730003628039095 )
BMC Med Inform Decis Mak - BOSS: context-enhanced search for biomedical objects. ( 0,721887694656604 )
AMIA Annu Symp Proc - Query log analysis of an electronic health record search engine. ( 0,721212725541506 )
BMC Med Inform Decis Mak - Performance evaluation of Unified Medical Language System?'s synonyms expansion to query PubMed. ( 0,720963851990058 )
Int J Med Inform - FindZebra: a search engine for rare diseases. ( 0,718575757147955 )
J Am Med Inform Assoc - Design and usability study of an iconic user interface to ease information retrieval of medical guidelines. ( 0,71559496677783 )
J. Med. Internet Res. - The impact of search engine selection and sorting criteria on vaccination beliefs and attitudes: two experiments manipulating Google output. ( 0,715553929963264 )
J Am Med Inform Assoc - A literature search tool for intelligent extraction of disease-associated genes. ( 0,712940561903927 )
Brief. Bioinformatics - Fast and efficient searching of biological data resources--using EB-eye. ( 0,708724702065562 )
Inform Health Soc Care - Readability of online health information: implications for health literacy. ( 0,708239195515343 )
J Am Med Inform Assoc - Directing the public to evidence-based online content. ( 0,706977688208532 )
J Biomed Inform - Supporting effective health and biomedical information retrieval and navigation: a novel facet view interface evaluation. ( 0,705258064844485 )
Methods Inf Med - Developing topic-specific search filters for PubMed with click-through data. ( 0,702007609232491 )
J Med Syst - MIRASS: medical informatics research activity support system using information mashup network. ( 0,700666227835941 )
J Biomed Inform - Knowledge-based personalized search engine for the Web-based Human Musculoskeletal System Resources (HMSR) in biomechanics. ( 0,698011735125321 )
J Am Med Inform Assoc - Clinical research data warehouse governance for distributed research networks in the USA: a systematic review of the literature. ( 0,694948022100981 )
J Biomed Inform - A comparison of evaluation metrics for biomedical journals, articles, and websites in terms of sensitivity to topic. ( 0,691694767082477 )
J. Med. Internet Res. - Searching for truth: internet search patterns as a method of investigating online responses to a Russian illicit drug policy debate. ( 0,690474317920335 )
AMIA Annu Symp Proc - Using Co-Authoring and Cross-Referencing Information for MEDLINE Indexing. ( 0,682390821256575 )
AMIA Annu Symp Proc - A bottom-up approach to MEDLINE indexing recommendations. ( 0,682230513441463 )
J Chem Inf Model - Efficient substructure searching of large chemical libraries: the ABCD chemical cartridge. ( 0,681069322232874 )
J Am Med Inform Assoc - Improving image retrieval effectiveness via query expansion using MeSH hierarchical structure. ( 0,679107403559016 )
J. Med. Internet Res. - Clinician search behaviors may be influenced by search engine design. ( 0,675902690099632 )
J Biomed Inform - A semi-supervised approach to extract pharmacogenomics-specific drug-gene pairs from biomedical literature for personalized medicine. ( 0,673903599924121 )
Perspect Health Inf Manag - Risk factors for bladder cancer: challenges of conducting a literature search using PubMed. ( 0,66878251647466 )
J Biomed Inform - Improving search over Electronic Health Records using UMLS-based query expansion through random walks. ( 0,667131049674132 )
AMIA Annu Symp Proc - An automated approach for ranking journals to help in clinician decision support. ( 0,6668237651744 )
J Chem Inf Model - Speeding up chemical searches using the inverted index: the convergence of chemoinformatics and text search methods. ( 0,666521141208892 )
J Biomed Inform - Improving MeSH classification of biomedical articles using citation contexts. ( 0,665698457205303 )
BMC Med Inform Decis Mak - Pharmacoeconomics and its implication on priority-setting for essential medicines in Tanzania: a systematic review. ( 0,6632653740799 )
Methods Inf Med - Technology-induced errors. The current use of frameworks and models from the biomedical and life sciences literatures. ( 0,659810876114524 )
AMIA Annu Symp Proc - Finding and accessing diagrams in biomedical publications. ( 0,659084623492257 )
J. Med. Internet Res. - Net improvement of correct answers to therapy questions after pubmed searches: pre/post comparison. ( 0,657979860080774 )
Telemed J E Health - A web search on environmental topics: what is the role of ranking? ( 0,657534345285704 )
AMIA Annu Symp Proc - Development and evaluation of a prototype search engine to meet public health information needs. ( 0,656950692447389 )
Health Info Libr J - Where and how to search for information on the effectiveness of public health interventions - a case study for prevention of cardiovascular disease. ( 0,653936662575538 )
J Integr Bioinform - GMB: an efficient query processor for biological data. ( 0,652961327495979 )
Artif Intell Med - Understanding the nature of information seeking behavior in critical care: implications for the design of health information technology. ( 0,652629359783663 )
J Am Med Inform Assoc - Federated queries of clinical data repositories: the sum of the parts does not equal the whole. ( 0,652402576629306 )
J. Med. Internet Res. - Automatic evidence retrieval for systematic reviews. ( 0,646422116006752 )
J. Med. Internet Res. - Accessing suicide-related information on the internet: a retrospective observational study of search behavior. ( 0,642340140798972 )
AMIA Annu Symp Proc - Deterministic binary vectors for efficient automated indexing of MEDLINE/PubMed abstracts. ( 0,641260415591795 )
Methods Inf Med - A survey on visual information search behavior and requirements of radiologists. ( 0,641119409923834 )
J. Med. Internet Res. - Comparative analysis of online health queries originating from personal computers and smart devices on a consumer health information portal. ( 0,636651189172905 )
Int J Med Inform - The publication echo: effects of retrieving literature in PubMed by year of publication. ( 0,636146478888282 )
Health Info Libr J - Can we prioritise which databases to search? A case study using a systematic review of frozen shoulder management. ( 0,633935667075832 )
IEEE Trans Pattern Anal Mach Intell - IntentSearch: Capturing User Intention for One-Click Internet Image Search. ( 0,624067681705414 )
Res Synth Methods - Inquisitio validus Index Medicus: A simple method of validating MEDLINE systematic review searches. ( 0,620697682734204 )
Int J Med Inform - A study of the influence of task familiarity on user behaviors and performance with a MeSH term suggestion interface for PubMed bibliographic search. ( 0,619298633118287 )
AMIA Annu Symp Proc - Optimizing the txt2MEDLINE search portal for low-resource clinical decision support. ( 0,619237210482531 )
J. Med. Internet Res. - A study of innovative features in scholarly open access journals. ( 0,61663510350047 )
Res Synth Methods - Comprehensive computer searches and reporting in systematic reviews. ( 0,616489516720468 )
AMIA Annu Symp Proc - Dialect topic modeling for improved consumer medical search. ( 0,615510757225947 )
Health Info Libr J - Searching MEDLINE for Aboriginal and Torres Strait Islander health literature: questionable sensitivity. ( 0,615038289376038 )
J Biomed Inform - A mutation-centric approach to identifying pharmacogenomic relations in text. ( 0,614563692309755 )
Brief. Bioinformatics - Comparability and reproducibility of biomedical data. ( 0,610963112831531 )
J Chem Inf Model - Critical analysis of CCSD data quality. ( 0,609362229172769 )
Methods Inf Med - Toward a formalization of the process to select IMIA Yearbook best papers. ( 0,60916056411497 )