J. Comput. Biol. - Shapes of RNA pseudoknot structures.

Tópicos

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Resumo

In this article, we study abstract shapes of k-noncrossing, s-canonical RNA pseudoknot structures. We consider lv1k- and lv5k-shapes, which represent a generalization of the abstract p'- and p-shapes of RNA secondary structures introduced by Giegerich et al. Using a novel approach, we compute the generating functions of lv1k- and lv5k-shapes as well as the generating functions of all lv1k- and lv5k-shapes induced by all k-noncrossing, s-canonical RNA structures for fixed n. By means of singularity analysis of the generating functions, we derive explicit asymptotic expressions For online Supplementary Material, see www.liebertonline.com.

Resumo Limpo

articl studi abstract shape knoncross scanon rna pseudoknot structur consid lvk lvkshape repres general abstract p pshape rna secondari structur introduc giegerich et al use novel approach comput generat function lvk lvkshape well generat function lvk lvkshape induc knoncross scanon rna structur fix n mean singular analysi generat function deriv explicit asymptot express onlin supplementari materi see wwwliebertonlinecom

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