BMC Med Inform Decis Mak - CDAPubMed: a browser extension to retrieve EHR-based biomedical literature.

Tópicos

{ search(2224) databas(1162) retriev(909) }
{ data(1714) softwar(1251) tool(1186) }
{ ehr(2073) health(1662) electron(1139) }
{ data(3963) clinic(1234) research(1004) }
{ health(1844) social(1437) communiti(874) }
{ result(1111) use(1088) new(759) }
{ howev(809) still(633) remain(590) }
{ cancer(2502) breast(956) screen(824) }
{ system(1976) rule(880) can(841) }
{ method(1219) similar(1157) match(930) }
{ control(1307) perform(991) simul(935) }
{ research(1085) discuss(1038) issu(1018) }
{ process(1125) use(805) approach(778) }
{ featur(3375) classif(2383) classifi(1994) }
{ framework(1458) process(801) describ(734) }
{ system(1050) medic(1026) inform(1018) }
{ visual(1396) interact(850) tool(830) }
{ record(1888) medic(1808) patient(1693) }
{ health(3367) inform(1360) care(1135) }
{ data(3008) multipl(1320) sourc(1022) }
{ imag(1947) propos(1133) code(1026) }
{ take(945) account(800) differ(722) }
{ algorithm(1844) comput(1787) effici(935) }
{ model(2220) cell(1177) simul(1124) }
{ featur(1941) imag(1645) propos(1176) }
{ use(1733) differ(960) four(931) }
{ drug(1928) target(777) effect(648) }
{ inform(2794) health(2639) internet(1427) }
{ measur(2081) correl(1212) valu(896) }
{ imag(1057) registr(996) error(939) }
{ imag(2675) segment(2577) method(1081) }
{ patient(2315) diseas(1263) diabet(1191) }
{ surgeri(1148) surgic(1085) robot(1054) }
{ learn(2355) train(1041) set(1003) }
{ method(1557) propos(1049) approach(1037) }
{ design(1359) user(1324) use(1319) }
{ compound(1573) activ(1297) structur(1058) }
{ activ(1138) subject(705) human(624) }
{ time(1939) patient(1703) rate(768) }
{ can(981) present(881) function(850) }
{ survey(1388) particip(1329) question(1065) }
{ model(3404) distribut(989) bayesian(671) }
{ can(774) often(719) complex(702) }
{ data(1737) use(1416) pattern(1282) }
{ bind(1733) structur(1185) ligand(1036) }
{ sequenc(1873) structur(1644) protein(1328) }
{ imag(2830) propos(1344) filter(1198) }
{ network(2748) neural(1063) input(814) }
{ studi(2440) review(1878) systemat(933) }
{ motion(1329) object(1292) video(1091) }
{ assess(1506) score(1403) qualiti(1306) }
{ treatment(1704) effect(941) patient(846) }
{ problem(2511) optim(1539) algorithm(950) }
{ error(1145) method(1030) estim(1020) }
{ chang(1828) time(1643) increas(1301) }
{ concept(1167) ontolog(924) domain(897) }
{ clinic(1479) use(1117) guidelin(835) }
{ extract(1171) text(1153) clinic(932) }
{ care(1570) inform(1187) nurs(1089) }
{ general(901) number(790) one(736) }
{ method(984) reconstruct(947) comput(926) }
{ case(1353) use(1143) diagnosi(1136) }
{ studi(1410) differ(1259) use(1210) }
{ risk(3053) factor(974) diseas(938) }
{ perform(999) metric(946) measur(919) }
{ import(1318) role(1303) understand(862) }
{ model(2341) predict(2261) use(1141) }
{ perform(1367) use(1326) method(1137) }
{ studi(1119) effect(1106) posit(819) }
{ blood(1257) pressur(1144) flow(957) }
{ spatial(1525) area(1432) region(1030) }
{ model(3480) simul(1196) paramet(876) }
{ monitor(1329) mobil(1314) devic(1160) }
{ state(1844) use(1261) util(961) }
{ research(1218) medic(880) student(794) }
{ patient(2837) hospit(1953) medic(668) }
{ model(2656) set(1616) predict(1553) }
{ data(2317) use(1299) case(1017) }
{ age(1611) year(1155) adult(843) }
{ medic(1828) order(1363) alert(1069) }
{ signal(2180) analysi(812) frequenc(800) }
{ cost(1906) reduc(1198) effect(832) }
{ group(2977) signific(1463) compar(1072) }
{ sampl(1606) size(1419) use(1276) }
{ gene(2352) biolog(1181) express(1162) }
{ first(2504) two(1366) second(1323) }
{ intervent(3218) particip(2042) group(1664) }
{ patient(1821) servic(1111) care(1106) }
{ use(2086) technolog(871) perceiv(783) }
{ analysi(2126) use(1163) compon(1037) }
{ structur(1116) can(940) graph(676) }
{ high(1669) rate(1365) level(1280) }
{ use(976) code(926) identifi(902) }
{ implement(1333) system(1263) develop(1122) }
{ estim(2440) model(1874) function(577) }
{ decis(3086) make(1611) patient(1517) }
{ activ(1452) weight(1219) physic(1104) }
{ method(1969) cluster(1462) data(1082) }
{ method(2212) result(1239) propos(1039) }
{ detect(2391) sensit(1101) algorithm(908) }

Resumo

CKGROUND: Over the last few decades, the ever-increasing output of scientific publications has led to new challenges to keep up to date with the literature. In the biomedical area, this growth has introduced new requirements for professionals, e.g., physicians, who have to locate the exact papers that they need for their clinical and research work amongst a huge number of publications. Against this backdrop, novel information retrieval methods are even more necessary. While web search engines are widespread in many areas, facilitating access to all kinds of information, additional tools are required to automatically link information retrieved from these engines to specific biomedical applications. In the case of clinical environments, this also means considering aspects such as patient data security and confidentiality or structured contents, e.g., electronic health records (EHRs). In this scenario, we have developed a new tool to facilitate query building to retrieve scientific literature related to EHRs.RESULTS: We have developed CDAPubMed, an open-source web browser extension to integrate EHR features in biomedical literature retrieval approaches. Clinical users can use CDAPubMed to: (i) load patient clinical documents, i.e., EHRs based on the Health Level 7-Clinical Document Architecture Standard (HL7-CDA), (ii) identify relevant terms for scientific literature search in these documents, i.e., Medical Subject Headings (MeSH), automatically driven by the CDAPubMed configuration, which advanced users can optimize to adapt to each specific situation, and (iii) generate and launch literature search queries to a major search engine, i.e., PubMed, to retrieve citations related to the EHR under examination.CONCLUSIONS: CDAPubMed is a platform-independent tool designed to facilitate literature searching using keywords contained in specific EHRs. CDAPubMed is visually integrated, as an extension of a widespread web browser, within the standard PubMed interface. It has been tested on a public dataset of HL7-CDA documents, returning significantly fewer citations since queries are focused on characteristics identified within the EHR. For instance, compared with more than 200,000 citations retrieved by breast neoplasm, fewer than ten citations were retrieved when ten patient features were added using CDAPubMed. This is an open source tool that can be freely used for non-profit purposes and integrated with other existing systems.

Resumo Limpo

ckground last decad everincreas output scientif public led new challeng keep date literatur biomed area growth introduc new requir profession eg physician locat exact paper need clinic research work amongst huge number public backdrop novel inform retriev method even necessari web search engin widespread mani area facilit access kind inform addit tool requir automat link inform retriev engin specif biomed applic case clinic environ also mean consid aspect patient data secur confidenti structur content eg electron health record ehr scenario develop new tool facilit queri build retriev scientif literatur relat ehrsresult develop cdapubm opensourc web browser extens integr ehr featur biomed literatur retriev approach clinic user can use cdapubm load patient clinic document ie ehr base health level clinic document architectur standard hlcda ii identifi relev term scientif literatur search document ie medic subject head mesh automat driven cdapubm configur advanc user can optim adapt specif situat iii generat launch literatur search queri major search engin ie pubm retriev citat relat ehr examinationconclus cdapubm platformindepend tool design facilit literatur search use keyword contain specif ehr cdapubm visual integr extens widespread web browser within standard pubm interfac test public dataset hlcda document return signific fewer citat sinc queri focus characterist identifi within ehr instanc compar citat retriev breast neoplasm fewer ten citat retriev ten patient featur ad use cdapubm open sourc tool can freeli use nonprofit purpos integr exist system

Resumos Similares

Health Info Libr J - Facilitating access to evidence: Primary Health Care Search Filter. ( 0,821256799989884 )
AMIA Annu Symp Proc - Search filter precision can be improved by NOTing out irrelevant content. ( 0,818560214566875 )
J Integr Bioinform - The LAILAPS search engine: a feature model for relevance ranking in life science databases. ( 0,814530752333516 )
J Biomed Inform - MeSHy: Mining unanticipated PubMed information using frequencies of occurrences and concurrences of MeSH terms. ( 0,800657200829915 )
AMIA Annu Symp Proc - Query log analysis of an electronic health record search engine. ( 0,800527365520422 )
Telemed J E Health - MEDLINE versus EMBASE and CINAHL for telemedicine searches. ( 0,797666823854115 )
J Med Syst - MIRASS: medical informatics research activity support system using information mashup network. ( 0,79584464885403 )
J Am Med Inform Assoc - Search filters to identify geriatric medicine in Medline. ( 0,793961989541001 )
J. Med. Internet Res. - Retrieving clinical evidence: a comparison of PubMed and Google Scholar for quick clinical searches. ( 0,793185846400716 )
AMIA Annu Symp Proc - BIOSPIDA: A Relational Database Translator for NCBI. ( 0,79022503844809 )
J Biomed Inform - Improving search over Electronic Health Records using UMLS-based query expansion through random walks. ( 0,788817199947234 )
Health Info Libr J - Medical literature searches: a comparison of PubMed and Google Scholar. ( 0,788007165307651 )
BMC Med Inform Decis Mak - Glomerular disease search filters for Pubmed, Ovid Medline, and Embase: a development and validation study. ( 0,781520500960361 )
J Am Med Inform Assoc - Retrieval of diagnostic and treatment studies for clinical use through PubMed and PubMed's Clinical Queries filters. ( 0,780481791950283 )
J Integr Bioinform - Classification methods for finding articles describing protein-protein interactions in PubMed. ( 0,778646334111423 )
J. Med. Internet Res. - Sensitivity and predictive value of 15 PubMed search strategies to answer clinical questions rated against full systematic reviews. ( 0,778249597717255 )
J. Med. Internet Res. - Development and validation of filters for the retrieval of studies of clinical examination from Medline. ( 0,777903285062695 )
Int J Med Inform - An analysis of clinical queries in an electronic health record search utility. ( 0,775325813255812 )
J Telemed Telecare - How to improve your PubMed/MEDLINE searches: 1. background and basic searching. ( 0,772775374812145 )
J Biomed Inform - On the query reformulation technique for effective MEDLINE document retrieval. ( 0,77029997758842 )
J Chem Inf Model - Efficient substructure searching of large chemical libraries: the ABCD chemical cartridge. ( 0,763315491610176 )
J Am Med Inform Assoc - MEDLINE clinical queries are robust when searching in recent publishing years. ( 0,761720119274803 )
J Biomed Inform - Development and evaluation of a biomedical search engine using a predicate-based vector space model. ( 0,76116360888418 )
AMIA Annu Symp Proc - Evaluation of automated term groupings for detecting anaphylactic shock signals for drugs. ( 0,759965833709048 )
Methods Inf Med - Learning the preferences of physicians for the organization of result lists of medical evidence articles. ( 0,757712136353925 )
AMIA Annu Symp Proc - Does query expansion limit our learning? A comparison of social-based expansion to content-based expansion for medical queries on the internet. ( 0,757048617227178 )
Int J Health Geogr - HEALTH GeoJunction: place-time-concept browsing of health publications. ( 0,754870940057957 )
J Integr Bioinform - The LAILAPS search engine: relevance ranking in life science databases. ( 0,753895263373896 )
Health Info Libr J - Utilisation of search filters in systematic reviews of prognosis questions. ( 0,750578338741656 )
J Am Med Inform Assoc - Search terms and a validated brief search filter to retrieve publications on health-related values in Medline: a word frequency analysis study. ( 0,750170084346577 )
J. Med. Internet Res. - Definition of Health 2.0 and Medicine 2.0: a systematic review. ( 0,746139198272941 )
BMC Med Inform Decis Mak - Boolean versus ranked querying for biomedical systematic reviews. ( 0,744218344443355 )
BMC Med Inform Decis Mak - Performance evaluation of Unified Medical Language System?'s synonyms expansion to query PubMed. ( 0,741926543925084 )
J Integr Bioinform - A query suggestion workflow for life science IR-systems. ( 0,739578051907561 )
Brief. Bioinformatics - Fast and efficient searching of biological data resources--using EB-eye. ( 0,737596954900449 )
Health Info Libr J - The performance of adverse effects search filters in MEDLINE and EMBASE. ( 0,72970749685808 )
Health Info Libr J - Searching for randomised controlled trials and clinical controlled trials in Thai online bibliographical biomedical databases. ( 0,728639212151501 )
Health Info Libr J - Assessment of indexing trends with specific and general terms for herbal medicine. ( 0,725180850515985 )
BMC Med Inform Decis Mak - BOSS: context-enhanced search for biomedical objects. ( 0,721660493644633 )
Health Info Libr J - Sensitivity and precision of adverse effects search filters in MEDLINE and EMBASE: a case study of fractures with thiazolidinediones. ( 0,721291333770886 )
Health Info Libr J - Developing a geographic search filter to identify randomised controlled trials in Africa: finding the optimal balance between sensitivity and precision. ( 0,719593042538053 )
BMC Med Inform Decis Mak - Publication trends of shared decision making in 15 high impact medical journals: a full-text review with bibliometric analysis. ( 0,716657933896613 )
J. Med. Internet Res. - Using Internet search engines to obtain medical information: a comparative study. ( 0,709730347104536 )
J Am Med Inform Assoc - Federated queries of clinical data repositories: the sum of the parts does not equal the whole. ( 0,709720349533568 )
J Am Med Inform Assoc - A practical approach to achieve private medical record linkage in light of public resources. ( 0,706155109050942 )
Methods Inf Med - Developing topic-specific search filters for PubMed with click-through data. ( 0,704610129592059 )
AMIA Annu Symp Proc - Using Co-Authoring and Cross-Referencing Information for MEDLINE Indexing. ( 0,703560465965322 )
BMC Med Inform Decis Mak - Information discovery on electronic health records using authority flow techniques. ( 0,698003649506466 )
J Chem Inf Model - Speeding up chemical searches using the inverted index: the convergence of chemoinformatics and text search methods. ( 0,696918877424126 )
IEEE Trans Vis Comput Graph - WORDGRAPH: Keyword-in-Context Visualization for NETSPEAK's Wildcard Search. ( 0,695542589452398 )
J. Med. Internet Res. - A search engine to access PubMed monolingual subsets: proof of concept and evaluation in French. ( 0,694176390175544 )
J Biomed Inform - Knowledge-based personalized search engine for the Web-based Human Musculoskeletal System Resources (HMSR) in biomechanics. ( 0,693044432795233 )
Int J Med Inform - MEDRank: using graph-based concept ranking to index biomedical texts. ( 0,685957897160189 )
J Integr Bioinform - GMB: an efficient query processor for biological data. ( 0,681680376442076 )
Perspect Health Inf Manag - Risk factors for bladder cancer: challenges of conducting a literature search using PubMed. ( 0,681240740395637 )
Methods Inf Med - A survey on visual information search behavior and requirements of radiologists. ( 0,680034284512086 )
J Biomed Inform - Using statistical text mining to supplement the development of an ontology. ( 0,679524802008775 )
J Biomed Inform - Reflective random indexing for semi-automatic indexing of the biomedical literature. ( 0,679400200253603 )
J. Med. Internet Res. - A study of innovative features in scholarly open access journals. ( 0,679174401501904 )
J Am Med Inform Assoc - A literature search tool for intelligent extraction of disease-associated genes. ( 0,67610697281132 )
J Am Med Inform Assoc - Clinical research data warehouse governance for distributed research networks in the USA: a systematic review of the literature. ( 0,675614254613373 )
J Am Med Inform Assoc - Directing the public to evidence-based online content. ( 0,673321218994334 )
J Biomed Inform - A semi-supervised approach to extract pharmacogenomics-specific drug-gene pairs from biomedical literature for personalized medicine. ( 0,671378716220046 )
J. Med. Internet Res. - The impact of search engine selection and sorting criteria on vaccination beliefs and attitudes: two experiments manipulating Google output. ( 0,671274688306815 )
J Am Med Inform Assoc - PhenDisco: phenotype discovery system for the database of genotypes and phenotypes. ( 0,670965339143406 )
Comput Methods Programs Biomed - RDFBuilder: a tool to automatically build RDF-based interfaces for MAGE-OM microarray data sources. ( 0,668511223646728 )
Health Info Libr J - Where and how to search for information on the effectiveness of public health interventions - a case study for prevention of cardiovascular disease. ( 0,66719744337032 )
Int J Med Inform - FindZebra: a search engine for rare diseases. ( 0,665469380382028 )
Health Info Libr J - Can we prioritise which databases to search? A case study using a systematic review of frozen shoulder management. ( 0,663026900994962 )
Methods Inf Med - Technology-induced errors. The current use of frameworks and models from the biomedical and life sciences literatures. ( 0,662981108677755 )
AMIA Annu Symp Proc - Web to world: predicting transitions from self-diagnosis to the pursuit of local medical assistance in web search. ( 0,659970458064667 )
Inform Health Soc Care - Readability of online health information: implications for health literacy. ( 0,657987579793838 )
AMIA Annu Symp Proc - Dialect topic modeling for improved consumer medical search. ( 0,657916602194928 )
J. Med. Internet Res. - Net improvement of correct answers to therapy questions after pubmed searches: pre/post comparison. ( 0,657845792923786 )
J Biomed Inform - Improving MeSH classification of biomedical articles using citation contexts. ( 0,657333692560435 )
J. Med. Internet Res. - Comparative analysis of online health queries originating from personal computers and smart devices on a consumer health information portal. ( 0,657231163702481 )
J Biomed Inform - A comparison of evaluation metrics for biomedical journals, articles, and websites in terms of sensitivity to topic. ( 0,657090325502607 )
J Am Med Inform Assoc - Design and usability study of an iconic user interface to ease information retrieval of medical guidelines. ( 0,656615503841899 )
J Biomed Inform - Supporting effective health and biomedical information retrieval and navigation: a novel facet view interface evaluation. ( 0,655713599170257 )
AMIA Annu Symp Proc - A bottom-up approach to MEDLINE indexing recommendations. ( 0,651054507162698 )
Res Synth Methods - Comprehensive computer searches and reporting in systematic reviews. ( 0,646221481454827 )
J Am Med Inform Assoc - Automatically extracting sentences from Medline citations to support clinicians' information needs. ( 0,641392152687123 )
AMIA Annu Symp Proc - Finding and accessing diagrams in biomedical publications. ( 0,638533728074259 )
J. Med. Internet Res. - Searching for truth: internet search patterns as a method of investigating online responses to a Russian illicit drug policy debate. ( 0,632507087429731 )
AMIA Annu Symp Proc - Optimizing the txt2MEDLINE search portal for low-resource clinical decision support. ( 0,63202215281495 )
J Integr Bioinform - On comparison of SimTandem with state-of-the-art peptide identification tools, efficiency of precursor mass filter and dealing with variable modifications. ( 0,627018011304053 )
AMIA Annu Symp Proc - Development and evaluation of a prototype search engine to meet public health information needs. ( 0,62646642883047 )
J. Med. Internet Res. - Automatic evidence retrieval for systematic reviews. ( 0,622244825866802 )
Res Synth Methods - Inquisitio validus Index Medicus: A simple method of validating MEDLINE systematic review searches. ( 0,622007368490749 )
J Integr Bioinform - SNPRanker: a tool for identification and scoring of SNPs associated to target genes. ( 0,621609884299238 )
J Am Med Inform Assoc - Improving image retrieval effectiveness via query expansion using MeSH hierarchical structure. ( 0,620140871853147 )
J. Med. Internet Res. - Clinician search behaviors may be influenced by search engine design. ( 0,619042544116233 )
AMIA Annu Symp Proc - An automated approach for ranking journals to help in clinician decision support. ( 0,61447340419223 )
BMC Med Inform Decis Mak - A method for encoding clinical datasets with SNOMED CT. ( 0,61344175168367 )
Appl Clin Inform - Usability of selected databases for low-resource clinical decision support. ( 0,612755337249162 )
Curr Protoc Bioinformatics - Using PeptideAtlas, SRMAtlas, and PASSEL: Comprehensive Resources for Discovery and Targeted Proteomics. ( 0,61195134572543 )
BMC Med Inform Decis Mak - Accessing the public MIMIC-II intensive care relational database for clinical research. ( 0,609934055239238 )
AMIA Annu Symp Proc - Barriers to retrieving patient information from electronic health record data: failure analysis from the TREC Medical Records Track. ( 0,608392824533501 )
J Am Med Inform Assoc - DCMDSM: a DICOM decomposed storage model. ( 0,607013626572765 )
Int J Med Inform - The publication echo: effects of retrieving literature in PubMed by year of publication. ( 0,599282534338573 )