Methods Inf Med - Biomedical informatics: we are what we publish.

Tópicos

{ research(1218) medic(880) student(794) }
{ search(2224) databas(1162) retriev(909) }
{ concept(1167) ontolog(924) domain(897) }
{ use(976) code(926) identifi(902) }
{ clinic(1479) use(1117) guidelin(835) }
{ first(2504) two(1366) second(1323) }
{ inform(2794) health(2639) internet(1427) }
{ record(1888) medic(1808) patient(1693) }
{ learn(2355) train(1041) set(1003) }
{ can(981) present(881) function(850) }
{ measur(2081) correl(1212) valu(896) }
{ care(1570) inform(1187) nurs(1089) }
{ research(1085) discuss(1038) issu(1018) }
{ system(1976) rule(880) can(841) }
{ method(1219) similar(1157) match(930) }
{ imag(2830) propos(1344) filter(1198) }
{ network(2748) neural(1063) input(814) }
{ imag(2675) segment(2577) method(1081) }
{ chang(1828) time(1643) increas(1301) }
{ control(1307) perform(991) simul(935) }
{ howev(809) still(633) remain(590) }
{ data(3963) clinic(1234) research(1004) }
{ studi(1410) differ(1259) use(1210) }
{ model(2341) predict(2261) use(1141) }
{ visual(1396) interact(850) tool(830) }
{ perform(1367) use(1326) method(1137) }
{ studi(1119) effect(1106) posit(819) }
{ spatial(1525) area(1432) region(1030) }
{ monitor(1329) mobil(1314) devic(1160) }
{ state(1844) use(1261) util(961) }
{ signal(2180) analysi(812) frequenc(800) }
{ cost(1906) reduc(1198) effect(832) }
{ data(3008) multipl(1320) sourc(1022) }
{ patient(1821) servic(1111) care(1106) }
{ analysi(2126) use(1163) compon(1037) }
{ high(1669) rate(1365) level(1280) }
{ cancer(2502) breast(956) screen(824) }
{ drug(1928) target(777) effect(648) }
{ result(1111) use(1088) new(759) }
{ implement(1333) system(1263) develop(1122) }
{ model(3404) distribut(989) bayesian(671) }
{ can(774) often(719) complex(702) }
{ imag(1947) propos(1133) code(1026) }
{ data(1737) use(1416) pattern(1282) }
{ imag(1057) registr(996) error(939) }
{ bind(1733) structur(1185) ligand(1036) }
{ sequenc(1873) structur(1644) protein(1328) }
{ featur(3375) classif(2383) classifi(1994) }
{ patient(2315) diseas(1263) diabet(1191) }
{ take(945) account(800) differ(722) }
{ studi(2440) review(1878) systemat(933) }
{ motion(1329) object(1292) video(1091) }
{ assess(1506) score(1403) qualiti(1306) }
{ treatment(1704) effect(941) patient(846) }
{ surgeri(1148) surgic(1085) robot(1054) }
{ framework(1458) process(801) describ(734) }
{ problem(2511) optim(1539) algorithm(950) }
{ error(1145) method(1030) estim(1020) }
{ algorithm(1844) comput(1787) effici(935) }
{ extract(1171) text(1153) clinic(932) }
{ method(1557) propos(1049) approach(1037) }
{ data(1714) softwar(1251) tool(1186) }
{ design(1359) user(1324) use(1319) }
{ model(2220) cell(1177) simul(1124) }
{ general(901) number(790) one(736) }
{ method(984) reconstruct(947) comput(926) }
{ featur(1941) imag(1645) propos(1176) }
{ case(1353) use(1143) diagnosi(1136) }
{ risk(3053) factor(974) diseas(938) }
{ perform(999) metric(946) measur(919) }
{ system(1050) medic(1026) inform(1018) }
{ import(1318) role(1303) understand(862) }
{ compound(1573) activ(1297) structur(1058) }
{ blood(1257) pressur(1144) flow(957) }
{ health(3367) inform(1360) care(1135) }
{ model(3480) simul(1196) paramet(876) }
{ ehr(2073) health(1662) electron(1139) }
{ patient(2837) hospit(1953) medic(668) }
{ model(2656) set(1616) predict(1553) }
{ data(2317) use(1299) case(1017) }
{ age(1611) year(1155) adult(843) }
{ medic(1828) order(1363) alert(1069) }
{ group(2977) signific(1463) compar(1072) }
{ sampl(1606) size(1419) use(1276) }
{ gene(2352) biolog(1181) express(1162) }
{ intervent(3218) particip(2042) group(1664) }
{ activ(1138) subject(705) human(624) }
{ time(1939) patient(1703) rate(768) }
{ use(2086) technolog(871) perceiv(783) }
{ health(1844) social(1437) communiti(874) }
{ structur(1116) can(940) graph(676) }
{ use(1733) differ(960) four(931) }
{ survey(1388) particip(1329) question(1065) }
{ estim(2440) model(1874) function(577) }
{ decis(3086) make(1611) patient(1517) }
{ process(1125) use(805) approach(778) }
{ activ(1452) weight(1219) physic(1104) }
{ method(1969) cluster(1462) data(1082) }
{ method(2212) result(1239) propos(1039) }
{ detect(2391) sensit(1101) algorithm(908) }

Resumo

TRODUCTION: This article is part of a For-Discussion-Section of Methods of Information in Medicine on "Biomedical Informatics: We are what we publish". It is introduced by an editorial and followed by a commentary paper with invited comments. In subsequent issues the discussion may continue through letters to the editor.OBJECTIVE: Informatics experts have attempted to define the field via consensus projects which has led to consensus statements by both AMIA. and by IMIA. We add to the output of this process the results of a study of the Pubmed publications with abstracts from the field of Biomedical Informatics.METHODS: We took the terms from the AMIA consensus document and the terms from the IMIA definitions of the field of Biomedical Informatics and combined them through human review to create the Health Informatics Ontology. We built a terminology server using the Intelligent Natural Language Processor (iNLP). Then we downloaded the entire set of articles in Medline identified by searching the literature by "Medical Informatics" OR "Bioinformatics". The articles were parsed by the joint AMIA/IMIA terminology and then again using SNOMED CT and for the Bioinformatics they were also parsed using HGNC Ontology.RESULTS: We identified 153,580 articles using "Medical Informatics" and 20,573 articles using "Bioinformatics". This resulted in 168,298 unique articles and an overlap of 5,855 articles. Of these 62,244 articles (37%) had titles and abstracts that contained at least one concept from the Health Informatics Ontology. SNOMED CT indexing showed that the field interacts with most all clinical fields of medicine.CONCLUSIONS: Further defining the field by what we publish can add value to the consensus driven processes that have been the mainstay of the efforts to date. Next steps should be to extract terms from the literature that are uncovered and create class hierarchies and relationships for this content. We should also examine the high occurring of MeSH terms as markers to define Biomedical Informatics. Greater understanding of the Biomedical Informatics Literature has the potential to lead to improved self-awareness for our field.

Resumo Limpo

troduct articl part fordiscussionsect method inform medicin biomed informat publish introduc editori follow commentari paper invit comment subsequ issu discuss may continu letter editorobject informat expert attempt defin field via consensus project led consensus statement amia imia add output process result studi pubm public abstract field biomed informaticsmethod took term amia consensus document term imia definit field biomed informat combin human review creat health informat ontolog built terminolog server use intellig natur languag processor inlp download entir set articl medlin identifi search literatur medic informat bioinformat articl pars joint amiaimia terminolog use snome ct bioinformat also pars use hgnc ontologyresult identifi articl use medic informat articl use bioinformat result uniqu articl overlap articl articl titl abstract contain least one concept health informat ontolog snome ct index show field interact clinic field medicineconclus defin field publish can add valu consensus driven process mainstay effort date next step extract term literatur uncov creat class hierarchi relationship content also examin high occur mesh term marker defin biomed informat greater understand biomed informat literatur potenti lead improv selfawar field

Resumos Similares

Methods Inf Med - Highly cited articles in health care sciences and services field in Science Citation Index Expanded. A bibliometric analysis for 1958 -2012. ( 0,856479980259093 )
Methods Inf Med - An architecture for diversity-aware search for medical web content. ( 0,8115196125358 )
J Med Syst - MIRASS: medical informatics research activity support system using information mashup network. ( 0,78366626171683 )
AMIA Annu Symp Proc - Leveraging user query sessions to improve searching of medical literature. ( 0,77227210788564 )
AMIA Annu Symp Proc - Author keywords in biomedical journal articles. ( 0,76335237496543 )
Int J Med Inform - An overview of medical informatics education in China. ( 0,762221817550671 )
Perspect Health Inf Manag - Gaps in the existing public health informatics training programs: a challenge to the development of a skilled global workforce. ( 0,754754330170066 )
BMC Med Inform Decis Mak - e-MIR2: a public online inventory of medical informatics resources. ( 0,747342273715061 )
Health Info Libr J - The accuracy of references in PhD theses: a case study. ( 0,734166947750101 )
Comput Math Methods Med - BioTCM-SE: a semantic search engine for the information retrieval of modern biology and traditional Chinese medicine. ( 0,733019324342968 )
Health Info Libr J - Medicine and literature: a section in a medical university library. ( 0,732852819975746 )
AMIA Annu Symp Proc - Gap analysis of biomedical informatics graduate education competencies. ( 0,72822153275368 )
Health Info Libr J - 'Today and more than ever, I FEEL LIKE A RESEARCHER': successful online learning collaborations between librarians and a Graduate School. ( 0,718766206706232 )
Appl Clin Inform - Clinical informatics board certification: history, current status, and predicted impact on the clinical informatics workforce. ( 0,716462585036989 )
Health Info Libr J - A bibliometric analysis of the clinical development of drugs in Norway for the year 2000. ( 0,712640297949513 )
Health Info Libr J - Teaching medical information retrieval and application courses in Chinese universities: a case study. ( 0,712505886537206 )
Health Info Libr J - Integrating evidence-based practice and information literacy skills in teaching physical and occupational therapy students. ( 0,709172682767437 )
BMC Med Inform Decis Mak - Visibility of medical informatics regarding bibliometric indices and databases. ( 0,707249134892331 )
Appl Clin Inform - Medical student appraisal: searching on smartphones. ( 0,707072495739742 )
AMIA Annu Symp Proc - Web to world: predicting transitions from self-diagnosis to the pursuit of local medical assistance in web search. ( 0,704997183349604 )
Health Info Libr J - Searching for randomised controlled trials and clinical controlled trials in Thai online bibliographical biomedical databases. ( 0,703907959559693 )
AMIA Annu Symp Proc - Deterministic binary vectors for efficient automated indexing of MEDLINE/PubMed abstracts. ( 0,702300342755701 )
Brief. Bioinformatics - Bioinformatics Training Network (BTN): a community resource for bioinformatics trainers. ( 0,701716406674116 )
J Am Med Inform Assoc - Automatically extracting sentences from Medline citations to support clinicians' information needs. ( 0,701353659590033 )
AMIA Annu Symp Proc - Developing an online and in-person HIT workforce training program using a team-based learning approach. ( 0,696632227951198 )
BMC Med Inform Decis Mak - Global informetric perspective studies on translational medical research. ( 0,696210594878959 )
Brief. Bioinformatics - Integrating bioinformatics into senior high school: design principles and implications. ( 0,692960717225214 )
Health Info Libr J - Integrating information literacy in health sciences curricula: a case study from Qu?bec. ( 0,690306133018802 )
J. Med. Internet Res. - A search engine to access PubMed monolingual subsets: proof of concept and evaluation in French. ( 0,684625755479573 )
Methods Inf Med - A medical informatics distance-learning course for Latin America. Translation, implementation and evaluation. ( 0,681085523229501 )
AMIA Annu Symp Proc - Trends in publication of nursing informatics research. ( 0,681077889983431 )
Inform Health Soc Care - Emerging medical informatics research trends detection based on MeSH terms. ( 0,679386454165998 )
J Am Med Inform Assoc - A curricula-based comparison of biomedical and health informatics programs in the USA. ( 0,678856527400044 )
J Am Med Inform Assoc - The NIH National Center for Integrative Biomedical Informatics (NCIBI). ( 0,678403026235717 )
Brief. Bioinformatics - A review of bioinformatics training applied to research in molecular medicine, agriculture and biodiversity in Costa Rica and Central America. ( 0,676638975333171 )
Health Info Libr J - Biomedical and health sciences publication productivity from Malaysia. ( 0,67632444782782 )
J. Med. Internet Res. - Interactive algorithms for teaching and learning acute medicine in the network of medical faculties MEFANET. ( 0,675933908509583 )
AMIA Annu Symp Proc - Using RxNorm and NDF-RT to classify medication data extracted from electronic health records: experiences from the Rochester Epidemiology Project. ( 0,675903962700314 )
J Am Med Inform Assoc - AMIA Board white paper: definition of biomedical informatics and specification of core competencies for graduate education in the discipline. ( 0,675778778983742 )
Telemed J E Health - MEDLINE versus EMBASE and CINAHL for telemedicine searches. ( 0,675173556236432 )
J. Med. Internet Res. - Ethical issues in using Twitter for public health surveillance and research: developing a taxonomy of ethical concepts from the research literature. ( 0,670306197905964 )
J Am Med Inform Assoc - Development and implementation of a biomedical informatics course for medical students: challenges of a large-scale blended-learning program. ( 0,670169664205291 )
J Integr Bioinform - The LAILAPS search engine: a feature model for relevance ranking in life science databases. ( 0,669616477734377 )
AMIA Annu Symp Proc - Use of standard drug vocabularies in clinical research: a case study in pediatrics. ( 0,669152814967268 )
Perspect Health Inf Manag - Developing a capstone course within a health informatics program. ( 0,669151676569388 )
J. Med. Internet Res. - Using Internet search engines to obtain medical information: a comparative study. ( 0,666226834339294 )
Health Info Libr J - Website creation and resource management: developing collaborative strategies for asynchronous interaction with library users. ( 0,665294968268731 )
Brief. Bioinformatics - Bioinformatics training: a review of challenges, actions and support requirements. ( 0,662544949585561 )
Brief. Bioinformatics - Bioinformatics education in India. ( 0,66195922642999 )
Methods Inf Med - Training health professionals in bioinformatics. Experiences and lessons learned. ( 0,66145575985007 )
AMIA Annu Symp Proc - A Semantic-based Approach for Exploring Consumer Health Questions Using UMLS. ( 0,657893356749292 )
Brief. Bioinformatics - Bioinformatics education dissemination with an evolutionary problem solving perspective. ( 0,656485634923902 )
Health Info Libr J - Further developing the library curriculum: skills for life delivery. ( 0,654475115783763 )
Brief. Bioinformatics - A model for Bioinformatics training: the marine biological laboratory. ( 0,651743893945039 )
Brief. Bioinformatics - Teaching the ABCs of bioinformatics: a brief introduction to the Applied Bioinformatics Course. ( 0,651646210507697 )
Brief. Bioinformatics - Education resources of the National Center for Biotechnology Information. ( 0,648483846528634 )
J. Med. Internet Res. - Massive open online courses on health and medicine: review. ( 0,648221614239977 )
J Am Med Inform Assoc - The Greater Plains Collaborative: a PCORnet Clinical Research Data Network. ( 0,648092257115274 )
Health Info Libr J - Evidence-based information-seeking skills of junior doctors entering the workforce: an evaluation of the impact of information literacy training during pre-clinical years. ( 0,647616503165052 )
J. Med. Internet Res. - Beyond open big data: addressing unreliable research. ( 0,645528238623129 )
Brief. Bioinformatics - Best practices in bioinformatics training for life scientists. ( 0,64510461656034 )
Health Info Libr J - Iranians' contribution to world literature on neuroscience. ( 0,642255821524784 )
Methods Inf Med - Technology-induced errors. The current use of frameworks and models from the biomedical and life sciences literatures. ( 0,640544510599961 )
Int J Health Geogr - Drowning--a scientometric analysis and data acquisition of a constant global problem employing density equalizing mapping and scientometric benchmarking procedures. ( 0,63986782937591 )
J Am Med Inform Assoc - Retrieval of diagnostic and treatment studies for clinical use through PubMed and PubMed's Clinical Queries filters. ( 0,639805292736534 )
Methods Inf Med - On IMIA's International Activities in Health and Biomedical Informatics Education. ( 0,639183638316697 )
Appl Clin Inform - From bed to bench: bridging from informatics practice to theory: an exploratory analysis. ( 0,636755230714896 )
J Am Med Inform Assoc - Terminology challenges implementing the HL7 context-aware knowledge retrieval ('Infobutton') standard. ( 0,636244006012706 )
Appl Clin Inform - The challenges of publishing on health informatics in developing countries. ( 0,635754590303132 )
AMIA Annu Symp Proc - A student authored online medical education textbook: editing patterns and content evaluation of a medical student wiki. ( 0,633849046652164 )
Methods Inf Med - Development of national competency-based learning objectives Medical Informatics for undergraduate medical education. ( 0,632983255134362 )
J Biomed Inform - Knowledge-based personalized search engine for the Web-based Human Musculoskeletal System Resources (HMSR) in biomechanics. ( 0,632968754440527 )
J. Med. Internet Res. - Development and validation of filters for the retrieval of studies of clinical examination from Medline. ( 0,631399738518477 )
Brief. Bioinformatics - Bioinformatics and systems biology: bridging the gap between heterogeneous student backgrounds. ( 0,629104756581913 )
Telemed J E Health - Building the capacity to build capacity in e-health in sub-Saharan Africa: the KwaZulu-Natal experience. ( 0,625553788419822 )
J Integr Bioinform - Bio-Search Computing: integration and global ranking of bioinformatics search results. ( 0,623951460443945 )
J Biomed Inform - Associating co-authorship patterns with publications in high-impact journals. ( 0,623415923645917 )
J. Med. Internet Res. - Promoting business and entrepreneurial awareness in health care professionals: lessons from venture capital panels at medicine 2.0 conferences. ( 0,623231875571247 )
J Am Med Inform Assoc - MEDLINE clinical queries are robust when searching in recent publishing years. ( 0,621854710320099 )
Int J Med Inform - An analysis of clinical queries in an electronic health record search utility. ( 0,618151437759582 )
J. Med. Internet Res. - Definition of Health 2.0 and Medicine 2.0: a systematic review. ( 0,618079894790703 )
Health Info Libr J - Student attitudes towards clinical teaching resources in complementary medicine: a focus group examination of Australian naturopathic medicine students. ( 0,615047965125381 )
Telemed J E Health - Interactive tele-education applied to a distant clinical microbiology specialization university course. ( 0,614378093633911 )
J Integr Bioinform - The LAILAPS search engine: relevance ranking in life science databases. ( 0,613564149840645 )
AMIA Annu Symp Proc - A bottom-up approach to MEDLINE indexing recommendations. ( 0,612787052115996 )
Brief. Bioinformatics - Broader incorporation of bioinformatics in education: opportunities and challenges. ( 0,610615591080362 )
Int J Med Inform - MEDRank: using graph-based concept ranking to index biomedical texts. ( 0,609713949337383 )
J. Med. Internet Res. - Virtual patients in primary care: developing a reusable model that fosters reflective practice and clinical reasoning. ( 0,602343476292196 )
Brief. Bioinformatics - The GTPB training programme in Portugal. ( 0,601913459638865 )
J Am Med Inform Assoc - Direct2Experts: a pilot national network to demonstrate interoperability among research-networking platforms. ( 0,600525072964737 )
J. Comput. Biol. - Is there room for ethics within bioinformatics education? ( 0,600428926303296 )
J Biomed Inform - MeSHy: Mining unanticipated PubMed information using frequencies of occurrences and concurrences of MeSH terms. ( 0,60027920774402 )
J Am Med Inform Assoc - What informatics is and isn't. ( 0,600071471535332 )
Health Info Libr J - How the web was won ? by some. ( 0,599897940057442 )
J Integr Bioinform - An harmonised vocabulary for communicating and interchanging biofilms experimental results. ( 0,599389261978217 )
Health Info Libr J - The Library's role and challenges in implementing an e-learning strategy: a case study from northern Australia. ( 0,598645204307154 )
AMIA Annu Symp Proc - Does query expansion limit our learning? A comparison of social-based expansion to content-based expansion for medical queries on the internet. ( 0,596887007995926 )
Int J Health Geogr - HEALTH GeoJunction: place-time-concept browsing of health publications. ( 0,59519030957618 )
AMIA Annu Symp Proc - Search filter precision can be improved by NOTing out irrelevant content. ( 0,59487292503833 )
AMIA Annu Symp Proc - Evaluation of automated term groupings for detecting anaphylactic shock signals for drugs. ( 0,594510767452978 )