BMC Med Inform Decis Mak - Clinical map document based on XML (cMDX): document architecture with mapping feature for reporting and analysing prostate cancer in radical prostatectomy specimens.

Tópicos

{ data(3963) clinic(1234) research(1004) }
{ data(1714) softwar(1251) tool(1186) }
{ studi(1410) differ(1259) use(1210) }
{ visual(1396) interact(850) tool(830) }
{ record(1888) medic(1808) patient(1693) }
{ data(1737) use(1416) pattern(1282) }
{ extract(1171) text(1153) clinic(932) }
{ cancer(2502) breast(956) screen(824) }
{ surgeri(1148) surgic(1085) robot(1054) }
{ framework(1458) process(801) describ(734) }
{ featur(1941) imag(1645) propos(1176) }
{ case(1353) use(1143) diagnosi(1136) }
{ age(1611) year(1155) adult(843) }
{ patient(2315) diseas(1263) diabet(1191) }
{ error(1145) method(1030) estim(1020) }
{ clinic(1479) use(1117) guidelin(835) }
{ algorithm(1844) comput(1787) effici(935) }
{ model(2220) cell(1177) simul(1124) }
{ import(1318) role(1303) understand(862) }
{ model(2341) predict(2261) use(1141) }
{ patient(2837) hospit(1953) medic(668) }
{ implement(1333) system(1263) develop(1122) }
{ decis(3086) make(1611) patient(1517) }
{ method(2212) result(1239) propos(1039) }
{ model(3404) distribut(989) bayesian(671) }
{ method(1219) similar(1157) match(930) }
{ perform(999) metric(946) measur(919) }
{ research(1085) discuss(1038) issu(1018) }
{ ehr(2073) health(1662) electron(1139) }
{ state(1844) use(1261) util(961) }
{ model(2656) set(1616) predict(1553) }
{ signal(2180) analysi(812) frequenc(800) }
{ can(774) often(719) complex(702) }
{ imag(1947) propos(1133) code(1026) }
{ inform(2794) health(2639) internet(1427) }
{ system(1976) rule(880) can(841) }
{ measur(2081) correl(1212) valu(896) }
{ imag(1057) registr(996) error(939) }
{ bind(1733) structur(1185) ligand(1036) }
{ sequenc(1873) structur(1644) protein(1328) }
{ featur(3375) classif(2383) classifi(1994) }
{ imag(2830) propos(1344) filter(1198) }
{ network(2748) neural(1063) input(814) }
{ imag(2675) segment(2577) method(1081) }
{ take(945) account(800) differ(722) }
{ studi(2440) review(1878) systemat(933) }
{ motion(1329) object(1292) video(1091) }
{ assess(1506) score(1403) qualiti(1306) }
{ treatment(1704) effect(941) patient(846) }
{ problem(2511) optim(1539) algorithm(950) }
{ chang(1828) time(1643) increas(1301) }
{ learn(2355) train(1041) set(1003) }
{ concept(1167) ontolog(924) domain(897) }
{ method(1557) propos(1049) approach(1037) }
{ design(1359) user(1324) use(1319) }
{ control(1307) perform(991) simul(935) }
{ care(1570) inform(1187) nurs(1089) }
{ general(901) number(790) one(736) }
{ method(984) reconstruct(947) comput(926) }
{ search(2224) databas(1162) retriev(909) }
{ howev(809) still(633) remain(590) }
{ risk(3053) factor(974) diseas(938) }
{ system(1050) medic(1026) inform(1018) }
{ compound(1573) activ(1297) structur(1058) }
{ perform(1367) use(1326) method(1137) }
{ studi(1119) effect(1106) posit(819) }
{ blood(1257) pressur(1144) flow(957) }
{ spatial(1525) area(1432) region(1030) }
{ health(3367) inform(1360) care(1135) }
{ model(3480) simul(1196) paramet(876) }
{ monitor(1329) mobil(1314) devic(1160) }
{ research(1218) medic(880) student(794) }
{ data(2317) use(1299) case(1017) }
{ medic(1828) order(1363) alert(1069) }
{ cost(1906) reduc(1198) effect(832) }
{ group(2977) signific(1463) compar(1072) }
{ sampl(1606) size(1419) use(1276) }
{ gene(2352) biolog(1181) express(1162) }
{ data(3008) multipl(1320) sourc(1022) }
{ first(2504) two(1366) second(1323) }
{ intervent(3218) particip(2042) group(1664) }
{ activ(1138) subject(705) human(624) }
{ time(1939) patient(1703) rate(768) }
{ patient(1821) servic(1111) care(1106) }
{ use(2086) technolog(871) perceiv(783) }
{ can(981) present(881) function(850) }
{ analysi(2126) use(1163) compon(1037) }
{ health(1844) social(1437) communiti(874) }
{ structur(1116) can(940) graph(676) }
{ high(1669) rate(1365) level(1280) }
{ use(976) code(926) identifi(902) }
{ use(1733) differ(960) four(931) }
{ drug(1928) target(777) effect(648) }
{ result(1111) use(1088) new(759) }
{ survey(1388) particip(1329) question(1065) }
{ estim(2440) model(1874) function(577) }
{ process(1125) use(805) approach(778) }
{ activ(1452) weight(1219) physic(1104) }
{ method(1969) cluster(1462) data(1082) }
{ detect(2391) sensit(1101) algorithm(908) }

Resumo

CKGROUND: The pathology report of radical prostatectomy specimens plays an important role in clinical decisions and the prognostic evaluation in Prostate Cancer (PCa). The anatomical schema is a helpful tool to document PCa extension for clinical and research purposes. To achieve electronic documentation and analysis, an appropriate documentation model for anatomical schemas is needed. For this purpose we developed cMDX.METHODS: The document architecture of cMDX was designed according to Open Packaging Conventions by separating the whole data into template data and patient data. Analogue custom XML elements were considered to harmonize the graphical representation (e.g. tumour extension) with the textual data (e.g. histological patterns). The graphical documentation was based on the four-layer visualization model that forms the interaction between different custom XML elements. Sensible personal data were encrypted with a 256-bit cryptographic algorithm to avoid misuse. In order to assess the clinical value, we retrospectively analysed the tumour extension in 255 patients after radical prostatectomy.RESULTS: The pathology report with cMDX can represent pathological findings of the prostate in schematic styles. Such reports can be integrated into the hospital information system. "cMDX" documents can be converted into different data formats like text, graphics and PDF. Supplementary tools like cMDX Editor and an analyser tool were implemented. The graphical analysis of 255 prostatectomy specimens showed that PCa were mostly localized in the peripheral zone (Mean: 73% ? 25). 54% of PCa showed a multifocal growth pattern.CONCLUSIONS: cMDX can be used for routine histopathological reporting of radical prostatectomy specimens and provide data for scientific analysis.

Resumo Limpo

ckground patholog report radic prostatectomi specimen play import role clinic decis prognost evalu prostat cancer pca anatom schema help tool document pca extens clinic research purpos achiev electron document analysi appropri document model anatom schema need purpos develop cmdxmethod document architectur cmdx design accord open packag convent separ whole data templat data patient data analogu custom xml element consid harmon graphic represent eg tumour extens textual data eg histolog pattern graphic document base fourlay visual model form interact differ custom xml element sensibl person data encrypt bit cryptograph algorithm avoid misus order assess clinic valu retrospect analys tumour extens patient radic prostatectomyresult patholog report cmdx can repres patholog find prostat schemat style report can integr hospit inform system cmdx document can convert differ data format like text graphic pdf supplementari tool like cmdx editor analys tool implement graphic analysi prostatectomi specimen show pca most local peripher zone mean pca show multifoc growth patternconclus cmdx can use routin histopatholog report radic prostatectomi specimen provid data scientif analysi

Resumos Similares

Health Informatics J - Implementation of integrated heterogeneous electronic electrocardiography data into Maharaj Nakorn Chiang Mai Hospital Information System. ( 0,731230887845068 )
J Am Med Inform Assoc - Two open access, high-quality datasets from anesthetic records. ( 0,707080464624852 )
Int J Med Inform - Understanding data requirements of retrospective studies. ( 0,683640929785546 )
BMC Med Inform Decis Mak - CIS-based registration of quality of life in a single source approach. ( 0,680595614107062 )
Comput Methods Programs Biomed - A new tool for sharing and querying of clinical documents modeled using HL7 Version 3 standard. ( 0,678998124960077 )
Inform Health Soc Care - Multicentre clinical trials' data management: a hybrid solution to exploit the strengths of electronic data capture and electronic health records systems. ( 0,678735132361244 )
IEEE Trans Vis Comput Graph - Interactive Visual Analysis of Heterogeneous Scientific Data across an Interface. ( 0,677466681334049 )
BMC Med Inform Decis Mak - A repository based on a dynamically extensible data model supporting multidisciplinary research in neuroscience. ( 0,668890931508485 )
J Chem Inf Model - Managing the computational chemistry big data problem: the ioChem-BD platform. ( 0,648020383978031 )
J Med Syst - LAS: a software platform to support oncological data management. ( 0,645177613609354 )
J Med Syst - Linkage of data from diverse data sources (LDS): a data combination model provides clinical data of corresponding specimens in biobanking information system. ( 0,643040698712583 )
Appl Clin Inform - Using a scripted data entry process to transfer legacy immunization data while transitioning between electronic medical record systems. ( 0,642311288154355 )
Brief. Bioinformatics - Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration. ( 0,633180619658266 )
Int J Med Inform - Caring for individual patients and beyond: enhancing care through secondary use of data in a general practice setting. ( 0,631533964358822 )
J Med Syst - Development and application of a Chinese webpage suicide information mining system (sims). ( 0,630742703852272 )
J. Med. Internet Res. - Computing health quality measures using Informatics for Integrating Biology and the Bedside. ( 0,626979544418785 )
Comput Methods Programs Biomed - Efficient data management in a large-scale epidemiology research project. ( 0,622400297295889 )
J Biomed Inform - Utilizing RxNorm to support practical computing applications: capturing medication history in live electronic health records. ( 0,614090116521178 )
Appl Clin Inform - Unlocking Data for Clinical Research - The German i2b2 Experience. ( 0,6140356627067 )
AMIA Annu Symp Proc - ClinData Express--a metadata driven clinical research data management system for secondary use of clinical data. ( 0,613277819742145 )
AMIA Annu Symp Proc - Quantifying clinical data quality using relative gold standards. ( 0,613225784380898 )
J Chem Inf Model - Electronic laboratory notebook: the academic point of view. ( 0,612474773512685 )
J Biomed Inform - OnWARD: ontology-driven web-based framework for multi-center clinical studies. ( 0,611962482108826 )
Appl Clin Inform - Comparison of manual versus automated data collection method for an evidence-based nursing practice study. ( 0,610740007616235 )
J Am Med Inform Assoc - Challenges in creating an opt-in biobank with a registrar-based consent process and a commercial EHR. ( 0,609878950569601 )
AMIA Annu Symp Proc - An application for monitoring order set usage in a commercial electronic health record. ( 0,607325875723999 )
AMIA Annu Symp Proc - Clinical use of an enterprise data warehouse. ( 0,605521379558726 )
Appl Clin Inform - HIS-Based Support of Follow-Up Documentation - Concept and Implementation for Clinical Studies. ( 0,605418242998268 )
Int J Comput Assist Radiol Surg - Medical imaging informatics simulators: a tutorial. ( 0,60504803340619 )
J Biomed Inform - The utility of general purpose versus specialty clinical databases for research: warfarin dose estimation from extracted clinical variables. ( 0,603961806223792 )
Methods Inf Med - Development of an open metadata schema for prospective clinical research (openPCR) in China. ( 0,603581820554022 )
BMC Med Inform Decis Mak - HIS-based Kaplan-Meier plots--a single source approach for documenting and reusing routine survival information. ( 0,595713565239692 )
Appl Clin Inform - Multilingual Medical Data Models in ODM Format: A Novel Form-based Approach to Semantic Interoperability between Routine Healthcare and Clinical Research. ( 0,594072459134864 )
AMIA Annu Symp Proc - Demonstrating collect once, use many--assimilating public health secondary data use requirements into an existing Domain Analysis Model. ( 0,577380297375917 )
J Biomed Inform - Integrating electronic health record information to support integrated care: practical application of ontologies to improve the accuracy of diabetes disease registers. ( 0,574209824814155 )
Methods Inf Med - Harmonization of detailed clinical models with clinical study data standards. ( 0,5741583066251 )
J Biomed Inform - An informatics framework for the standardized collection and analysis of medication data in networked research. ( 0,571790406846219 )
J Med Syst - Building clinical data groups for electronic medical record in China. ( 0,570079095104899 )
Perspect Health Inf Manag - Integrating research data capture into the electronic health record workflow: real-world experience to advance innovation. ( 0,569940023370648 )
Methods Inf Med - An electronic specimen collection protocol schema (eSCPS). Document architecture for specimen management and the exchange of specimen collection protocols between biobanking information systems. ( 0,568460323843899 )
BMC Med Inform Decis Mak - Clinical data needs in the neonatal intensive care unit electronic medical record. ( 0,568244527521896 )
J Biomed Inform - A multi-technique approach to bridge electronic case report form design and data standard adoption. ( 0,566183040289838 )
Appl Clin Inform - Developing a tool to assess the quality of socio-demographic data in community health centres. ( 0,565542566701604 )
Int J Med Inform - Does single-source create an added value? Evaluating the impact of introducing x4T into the clinical routine on workflow modifications, data quality and cost-benefit. ( 0,562822490395759 )
Comput Methods Programs Biomed - QAIT: a quality assurance issue tracking tool to facilitate the improvement of clinical data quality. ( 0,560885033104586 )
J Am Med Inform Assoc - Implementing an interface terminology for structured clinical documentation. ( 0,558716449351215 )
J Am Med Inform Assoc - BiobankConnect: software to rapidly connect data elements for pooled analysis across biobanks using ontological and lexical indexing. ( 0,558554017011777 )
AMIA Annu Symp Proc - What Is Asked in Clinical Data Request Forms? A Multi-site Thematic Analysis of Forms Towards Better Data Access Support. ( 0,558549653905038 )
Methods Inf Med - UceWeb: a web-based collaborative tool for collecting and sharing quality of life data. ( 0,558220223234148 )
Comput Methods Programs Biomed - Five-year experience with setup and implementation of an integrated database system for clinical documentation and research. ( 0,557483407694437 )
AMIA Annu Symp Proc - Desiderata for healthcare integrated data repositories based on architectural comparison of three public repositories. ( 0,556345488092855 )
J Med Syst - Experiences with a PDA-based documentation system in clinical research. ( 0,556217494851123 )
J Am Med Inform Assoc - Multi-source development of an integrated model for family health history. ( 0,553967807669827 )
AMIA Annu Symp Proc - Integrating direct electronic collection of data from patients into the process of care for eye care professionals. ( 0,553253560738985 )
Methods Inf Med - Semi automated transformation to OWL formatted files as an approach to data integration. A feasibility study using environmental, disease register and primary care clinical data. ( 0,552129397640315 )
Comput Methods Programs Biomed - A simple versatile solution for collecting multidimensional clinical data based on the CakePHP web application framework. ( 0,550032595489998 )
J Am Med Inform Assoc - Development of an optical character recognition pipeline for handwritten form fields from an electronic health record. ( 0,549631053391232 )
Int J Med Inform - Secondary use of routinely collected patient data in a clinical trial: an evaluation of the effects on patient recruitment and data acquisition. ( 0,548028546912461 )
Int J Comput Assist Radiol Surg - 3D model-based documentation with the Tumor Therapy Manager (TTM) improves TNM staging of head and neck tumor patients. ( 0,546477306686037 )
J Med Syst - Managing repeat digital radiography images-a systematic approach and improvement. ( 0,545864571657829 )
J Am Med Inform Assoc - Normalization and standardization of electronic health records for high-throughput phenotyping: the SHARPn consortium. ( 0,545037511573162 )
Comput Methods Programs Biomed - PKgraph: an R package for graphically diagnosing population pharmacokinetic models. ( 0,541171412939522 )
J Am Med Inform Assoc - The Mid-South clinical Data Research Network. ( 0,539456128579461 )
Comput. Biol. Med. - GammaKey system for improved diagnostics with gamma cameras. ( 0,538799083089089 )
Curr Protoc Bioinformatics - Employing ProteoWizard to Convert Raw Mass Spectrometry Data. ( 0,538449642837123 )
Comput. Biol. Med. - LabSystem Gen, a tool for structuring and analyzing genetic data in histocompatibility laboratories. ( 0,535582684289753 )
J Med Syst - Performance assessment of EMR systems based on post-relational database. ( 0,534942035461605 )
J Biomed Inform - Research-IQ: development and evaluation of an ontology-anchored integrative query tool. ( 0,534723782298742 )
J Integr Bioinform - CardioVINEdb: a data warehouse approach for integration of life science data in cardiovascular diseases. ( 0,534484413477315 )
J Biomed Inform - Integrating clinical research with the Healthcare Enterprise: from the RE-USE project to the EHR4CR platform. ( 0,532946098788128 )
Comput Methods Programs Biomed - A mobile and asynchronous electronic data capture system for epidemiologic studies. ( 0,532725042103799 )
J Am Med Inform Assoc - Validation of a common data model for active safety surveillance research. ( 0,53270835378788 )
Perspect Health Inf Manag - Digital family histories for data mining. ( 0,532364932557113 )
AMIA Annu Symp Proc - The NIH Office of Rare Diseases Research patient registry Standard: a report from the University of New Mexico's Oculopharyngeal Muscular Dystrophy Patient Registry. ( 0,532182039691241 )
J Med Syst - Evaluating the ability of hospital information systems to establish evidence-based medicine in Iran. ( 0,531982461335941 )
J Biomed Inform - The National Institutes of Health's Biomedical Translational Research Information System (BTRIS): design, contents, functionality and experience to date. ( 0,53014693606564 )
Int J Med Inform - Harmonization of health data at national level: a pilot study in China. ( 0,529378389431535 )
J Biomed Inform - The need for harmonized structured documentation and chances of secondary use - results of a systematic analysis with automated form comparison for prostate and breast cancer. ( 0,52890460810124 )
J Chem Inf Model - How does the quality of phospholipidosis data influence the predictivity of structural alerts? ( 0,528305643844518 )
AMIA Annu Symp Proc - OPIC: Ontology-driven Patient Information Capturing system for epilepsy. ( 0,525681277571036 )
J Am Med Inform Assoc - Informatics and data quality at collaborative multicenter Breast and Colon Cancer Family Registries. ( 0,525225382434881 )
J Med Syst - Impact of the Patient-Reported Outcomes Management Information System (PROMIS) upon the design and operation of multi-center clinical trials: a qualitative research study. ( 0,524659935094928 )
J Am Med Inform Assoc - Evaluation of record linkage between a large healthcare provider and the Utah Population Database. ( 0,523867711915518 )
AMIA Annu Symp Proc - A simple method to extract key maternal data from neonatal clinical notes. ( 0,522687529323895 )
J Med Syst - Latent treatment pattern discovery for clinical processes. ( 0,521959044608454 )
J Am Med Inform Assoc - N-CANDA data integration: anatomy of an asynchronous infrastructure for multi-site, multi-instrument longitudinal data capture. ( 0,521356290903712 )
AMIA Annu Symp Proc - The SHARPn project on secondary use of Electronic Medical Record data: progress, plans, and possibilities. ( 0,520897032771878 )
BMC Med Inform Decis Mak - Ancillary study management systems: a review of needs. ( 0,520428484432732 )
Brief. Bioinformatics - Translational research platforms integrating clinical and omics data: a review of publicly available solutions. ( 0,520419034175281 )
AMIA Annu Symp Proc - Precision and negative predictive value of links between ClinicalTrials.gov and PubMed. ( 0,52025520293805 )
Appl Clin Inform - An information retrieval system for computerized patient records in the context of a daily hospital practice: the example of the L?on B?rard Cancer Center (France). ( 0,520146523956414 )
Comput Methods Programs Biomed - Cancer multicellular spheroids: volume assessment from a single 2D projection. ( 0,516911278149051 )
J Biomed Inform - The Analytic Information Warehouse (AIW): a platform for analytics using electronic health record data. ( 0,514782407572996 )
J Med Syst - COSARA: integrated service platform for infection surveillance and antibiotic management in the ICU. ( 0,513901883037102 )
AMIA Annu Symp Proc - The relationship between structural characteristics of 2010 challenge documents and ratings of document quality. ( 0,508503987058217 )
J Biomed Inform - Secondary use of electronic health records for building cohort studies through top-down information extraction. ( 0,508503987058217 )
J Am Med Inform Assoc - Electronic health records based phenotyping in next-generation clinical trials: a perspective from the NIH Health Care Systems Collaboratory. ( 0,50752483774105 )
AMIA Annu Symp Proc - A method for analyzing commonalities in clinical trial target populations. ( 0,505801722704791 )
AMIA Annu Symp Proc - Towards a semantic lexicon for clinical natural language processing. ( 0,505132692351778 )
AMIA Annu Symp Proc - Identifying High-Risk Patients without Labeled Training Data: Anomaly Detection Methodologies to Predict Adverse Outcomes. ( 0,504977216965083 )