Brief. Bioinformatics - A survey of error-correction methods for next-generation sequencing.

Tópicos

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Resumo

LABELLED: Error Correction is important for most next-generation sequencing applications because highly accurate sequenced reads will likely lead to higher quality results. Many techniques for error correction of sequencing data from next-gen platforms have been developed in the recent years. However, compared with the fast development of sequencing technologies, there is a lack of standardized evaluation procedure for different error-correction methods, making it difficult to assess their relative merits and demerits. In this article, we provide a comprehensive review of many error-correction methods, and establish a common set of benchmark data and evaluation criteria to provide a comparative assessment. We present experimental results on quality, run-time, memory usage and scalability of several error-correction methods. Apart from providing explicit recommendations useful to practitioners, the review serves to identify the current state of the art and promising directions for future research.AVAILABILITY: All error-correction programs used in this article are downloaded from hosting websites. The evaluation tool kit is publicly available at: http://aluru-sun.ece.iastate.edu/doku.php?id=ecr.

Resumo Limpo

label error correct import nextgener sequenc applic high accur sequenc read will like lead higher qualiti result mani techniqu error correct sequenc data nextgen platform develop recent year howev compar fast develop sequenc technolog lack standard evalu procedur differ errorcorrect method make difficult assess relat merit demerit articl provid comprehens review mani errorcorrect method establish common set benchmark data evalu criteria provid compar assess present experiment result qualiti runtim memori usag scalabl sever errorcorrect method apart provid explicit recommend use practition review serv identifi current state art promis direct futur researchavail errorcorrect program use articl download host websit evalu tool kit public avail httpalurusuneceiastateedudokuphpidecr

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