AMIA Annu Symp Proc - Desiderata for healthcare integrated data repositories based on architectural comparison of three public repositories.

Tópicos

{ data(1737) use(1416) pattern(1282) }
{ data(3963) clinic(1234) research(1004) }
{ model(2220) cell(1177) simul(1124) }
{ concept(1167) ontolog(924) domain(897) }
{ compound(1573) activ(1297) structur(1058) }
{ research(1218) medic(880) student(794) }
{ use(976) code(926) identifi(902) }
{ inform(2794) health(2639) internet(1427) }
{ featur(3375) classif(2383) classifi(1994) }
{ data(1714) softwar(1251) tool(1186) }
{ howev(809) still(633) remain(590) }
{ studi(1410) differ(1259) use(1210) }
{ gene(2352) biolog(1181) express(1162) }
{ data(3008) multipl(1320) sourc(1022) }
{ take(945) account(800) differ(722) }
{ studi(2440) review(1878) systemat(933) }
{ learn(2355) train(1041) set(1003) }
{ algorithm(1844) comput(1787) effici(935) }
{ design(1359) user(1324) use(1319) }
{ control(1307) perform(991) simul(935) }
{ care(1570) inform(1187) nurs(1089) }
{ featur(1941) imag(1645) propos(1176) }
{ perform(999) metric(946) measur(919) }
{ record(1888) medic(1808) patient(1693) }
{ health(3367) inform(1360) care(1135) }
{ ehr(2073) health(1662) electron(1139) }
{ age(1611) year(1155) adult(843) }
{ medic(1828) order(1363) alert(1069) }
{ structur(1116) can(940) graph(676) }
{ model(3404) distribut(989) bayesian(671) }
{ can(774) often(719) complex(702) }
{ imag(1947) propos(1133) code(1026) }
{ system(1976) rule(880) can(841) }
{ measur(2081) correl(1212) valu(896) }
{ imag(1057) registr(996) error(939) }
{ bind(1733) structur(1185) ligand(1036) }
{ sequenc(1873) structur(1644) protein(1328) }
{ method(1219) similar(1157) match(930) }
{ imag(2830) propos(1344) filter(1198) }
{ network(2748) neural(1063) input(814) }
{ imag(2675) segment(2577) method(1081) }
{ patient(2315) diseas(1263) diabet(1191) }
{ motion(1329) object(1292) video(1091) }
{ assess(1506) score(1403) qualiti(1306) }
{ treatment(1704) effect(941) patient(846) }
{ surgeri(1148) surgic(1085) robot(1054) }
{ framework(1458) process(801) describ(734) }
{ problem(2511) optim(1539) algorithm(950) }
{ error(1145) method(1030) estim(1020) }
{ chang(1828) time(1643) increas(1301) }
{ clinic(1479) use(1117) guidelin(835) }
{ extract(1171) text(1153) clinic(932) }
{ method(1557) propos(1049) approach(1037) }
{ general(901) number(790) one(736) }
{ method(984) reconstruct(947) comput(926) }
{ search(2224) databas(1162) retriev(909) }
{ case(1353) use(1143) diagnosi(1136) }
{ risk(3053) factor(974) diseas(938) }
{ research(1085) discuss(1038) issu(1018) }
{ system(1050) medic(1026) inform(1018) }
{ import(1318) role(1303) understand(862) }
{ model(2341) predict(2261) use(1141) }
{ visual(1396) interact(850) tool(830) }
{ perform(1367) use(1326) method(1137) }
{ studi(1119) effect(1106) posit(819) }
{ blood(1257) pressur(1144) flow(957) }
{ spatial(1525) area(1432) region(1030) }
{ model(3480) simul(1196) paramet(876) }
{ monitor(1329) mobil(1314) devic(1160) }
{ state(1844) use(1261) util(961) }
{ patient(2837) hospit(1953) medic(668) }
{ model(2656) set(1616) predict(1553) }
{ data(2317) use(1299) case(1017) }
{ signal(2180) analysi(812) frequenc(800) }
{ cost(1906) reduc(1198) effect(832) }
{ group(2977) signific(1463) compar(1072) }
{ sampl(1606) size(1419) use(1276) }
{ first(2504) two(1366) second(1323) }
{ intervent(3218) particip(2042) group(1664) }
{ activ(1138) subject(705) human(624) }
{ time(1939) patient(1703) rate(768) }
{ patient(1821) servic(1111) care(1106) }
{ use(2086) technolog(871) perceiv(783) }
{ can(981) present(881) function(850) }
{ analysi(2126) use(1163) compon(1037) }
{ health(1844) social(1437) communiti(874) }
{ high(1669) rate(1365) level(1280) }
{ cancer(2502) breast(956) screen(824) }
{ use(1733) differ(960) four(931) }
{ drug(1928) target(777) effect(648) }
{ result(1111) use(1088) new(759) }
{ implement(1333) system(1263) develop(1122) }
{ survey(1388) particip(1329) question(1065) }
{ estim(2440) model(1874) function(577) }
{ decis(3086) make(1611) patient(1517) }
{ process(1125) use(805) approach(778) }
{ activ(1452) weight(1219) physic(1104) }
{ method(1969) cluster(1462) data(1082) }
{ method(2212) result(1239) propos(1039) }
{ detect(2391) sensit(1101) algorithm(908) }

Resumo

Integrated data repositories (IDRs) are indispensable tools for numerous biomedical research studies. We compare three large IDRs (Informatics for Integrating Biology and the Bedside (i2b2), HMO Research Network's Virtual Data Warehouse (VDW) and Observational Medical Outcomes Partnership (OMOP) repository) in order to identify common architectural features that enable efficient storage and organization of large amounts of clinical data. We define three high-level classes of underlying data storage models and we analyze each repository using this classification. We look at how a set of sample facts is represented in each repository and conclude with a list of desiderata for IDRs that deal with the information storage model, terminology model, data integration and value-sets management.

Resumo Limpo

integr data repositori idr indispens tool numer biomed research studi compar three larg idr informat integr biolog bedsid ib hmo research network virtual data warehous vdw observ medic outcom partnership omop repositori order identifi common architectur featur enabl effici storag organ larg amount clinic data defin three highlevel class under data storag model analyz repositori use classif look set sampl fact repres repositori conclud list desiderata idr deal inform storag model terminolog model data integr valueset manag

Resumos Similares

J. Med. Internet Res. - Computing health quality measures using Informatics for Integrating Biology and the Bedside. ( 0,712446861880944 )
J Med Syst - Characterizing mammography reports for health analytics. ( 0,666285024878175 )
AMIA Annu Symp Proc - Demonstrating collect once, use many--assimilating public health secondary data use requirements into an existing Domain Analysis Model. ( 0,634357809783302 )
J Am Med Inform Assoc - Normalization and standardization of electronic health records for high-throughput phenotyping: the SHARPn consortium. ( 0,632902724333871 )
Appl Clin Inform - Comparison of manual versus automated data collection method for an evidence-based nursing practice study. ( 0,626202984274902 )
Int J Med Inform - Understanding data requirements of retrospective studies. ( 0,619153484076801 )
Comput Methods Programs Biomed - Multimodal fusion of biomedical data at different temporal and dimensional scales. ( 0,618632518321049 )
J. Comput. Biol. - VERSE: a varying effect regression for splicing elements discovery. ( 0,615743860996428 )
J Med Syst - Managing repeat digital radiography images-a systematic approach and improvement. ( 0,608946680906726 )
J Med Syst - Latent treatment pattern discovery for clinical processes. ( 0,603816605643205 )
Int J Med Inform - Harmonization of health data at national level: a pilot study in China. ( 0,591758060467267 )
Comput Methods Programs Biomed - A new tool for sharing and querying of clinical documents modeled using HL7 Version 3 standard. ( 0,590814618722371 )
J Integr Bioinform - Computational approaches to standard-compliant biofilm data for reliable analysis and integration. ( 0,590023819547831 )
J Am Med Inform Assoc - Modeling temporal relationships in large scale clinical associations. ( 0,589072366479285 )
J Med Syst - Development and application of a Chinese webpage suicide information mining system (sims). ( 0,587210543233317 )
Artif Intell Med - Discovering metric temporal constraint networks on temporal databases. ( 0,585786822939207 )
J Biomed Inform - Interestingness measures and strategies for mining multi-ontology multi-level association rules from gene ontology annotations for the discovery of new GO relationships. ( 0,583048816209805 )
Int J Health Geogr - Free and simple GIS as appropriate for health mapping in a low resource setting: a case study in eastern Indonesia. ( 0,582359923411546 )
J Chem Inf Model - How does the quality of phospholipidosis data influence the predictivity of structural alerts? ( 0,582279952080371 )
J Biomed Inform - Sequential patterns mining and gene sequence visualization to discover novelty from microarray data. ( 0,580185888622381 )
J Med Syst - Data mining in healthcare and biomedicine: a survey of the literature. ( 0,574468220412353 )
AMIA Annu Symp Proc - The NIH Office of Rare Diseases Research patient registry Standard: a report from the University of New Mexico's Oculopharyngeal Muscular Dystrophy Patient Registry. ( 0,573160949518599 )
J Am Med Inform Assoc - Don't take your EHR to heaven, donate it to science: legal and research policies for EHR post mortem. ( 0,5708563380479 )
J Med Syst - Evaluating cluster preservation in frequent itemset integration for distributed databases. ( 0,570685887449475 )
Artif Intell Med - On mining clinical pathway patterns from medical behaviors. ( 0,563460170522813 )
J Biomed Inform - The utility of general purpose versus specialty clinical databases for research: warfarin dose estimation from extracted clinical variables. ( 0,563101160612298 )
AMIA Annu Symp Proc - Exploring generalized association rule mining for disease co-occurrences. ( 0,562901066329272 )
IEEE Trans Vis Comput Graph - Interactive Visual Analysis of Heterogeneous Scientific Data across an Interface. ( 0,560337503440377 )
J Biomed Inform - Unraveling complex temporal associations in cellular systems across multiple time-series microarray datasets. ( 0,558434697783861 )
BMC Med Inform Decis Mak - Clinical map document based on XML (cMDX): document architecture with mapping feature for reporting and analysing prostate cancer in radical prostatectomy specimens. ( 0,556345488092855 )
J Biomed Inform - Integrating clinical research with the Healthcare Enterprise: from the RE-USE project to the EHR4CR platform. ( 0,552356428872499 )
Methods Inf Med - Development of an open metadata schema for prospective clinical research (openPCR) in China. ( 0,55218959338771 )
Comput. Biol. Med. - Mining approximate temporal functional dependencies with pure temporal grouping in clinical databases. ( 0,549532390291886 )
J Biomed Inform - The National Institutes of Health's Biomedical Translational Research Information System (BTRIS): design, contents, functionality and experience to date. ( 0,548454012711306 )
Brief. Bioinformatics - A primer to frequent itemset mining for bioinformatics. ( 0,548360557206024 )
J Chem Inf Model - Emerging pattern mining to aid toxicological knowledge discovery. ( 0,548321265306386 )
AMIA Annu Symp Proc - What Is Asked in Clinical Data Request Forms? A Multi-site Thematic Analysis of Forms Towards Better Data Access Support. ( 0,547700883977369 )
Comput Methods Programs Biomed - Efficient data management in a large-scale epidemiology research project. ( 0,546333517700888 )
J Am Med Inform Assoc - The National Institutes of Health's Big Data to Knowledge (BD2K) initiative: capitalizing on biomedical big data. ( 0,545220354320375 )
Appl Clin Inform - Unlocking Data for Clinical Research - The German i2b2 Experience. ( 0,542942383831659 )
J Integr Bioinform - Integrated simultaneous analysis of different biomedical data types with exact weighted bi-cluster editing. ( 0,542934521495374 )
Methods Inf Med - Toward a view-oriented approach for aligning RDF-based biomedical repositories. ( 0,54131273818328 )
J Med Syst - Discovering medical knowledge using association rule mining in young adults with acute myocardial infarction. ( 0,540898563446045 )
AMIA Annu Symp Proc - Sick patients have more data: the non-random completeness of electronic health records. ( 0,540054918925091 )
Inform Health Soc Care - Improving diagnostic accuracy using agent-based distributed data mining system. ( 0,53855926653627 )
J Am Med Inform Assoc - Multi-source development of an integrated model for family health history. ( 0,53853326352126 )
J Am Med Inform Assoc - Two open access, high-quality datasets from anesthetic records. ( 0,537931874163639 )
J Biomed Inform - An informatics framework for the standardized collection and analysis of medication data in networked research. ( 0,537797878494718 )
J Biomed Inform - A knowledge-driven conditional approach to extract pharmacogenomics specific drug-gene relationships from free text. ( 0,537358324301429 )
Appl Clin Inform - TRIAD: The Translational Research Informatics and Data Management Grid. ( 0,537163317537807 )
J Am Med Inform Assoc - Exchanging care records using HL7 V3 care provision messages. ( 0,536371001866665 )
AMIA Annu Symp Proc - OPIC: Ontology-driven Patient Information Capturing system for epilepsy. ( 0,535221588654782 )
AMIA Annu Symp Proc - Concordance of Electronic Health Record (EHR) Data Describing Delirium at a VA Hospital. ( 0,53396616832934 )
AMIA Annu Symp Proc - Linked data and online classifications to organise mined patterns in patient data. ( 0,533863149068128 )
AMIA Annu Symp Proc - Differences in nationwide cohorts of acupuncture users identified using structured and free text medical records. ( 0,533594622072345 )
J Biomed Inform - Research-IQ: development and evaluation of an ontology-anchored integrative query tool. ( 0,532675518927234 )
J Am Med Inform Assoc - A vector space model approach to identify genetically related diseases. ( 0,531416512128473 )
J. Med. Internet Res. - Missing data approaches in eHealth research: simulation study and a tutorial for nonmathematically inclined researchers. ( 0,53095732453124 )
Methods Inf Med - Semi automated transformation to OWL formatted files as an approach to data integration. A feasibility study using environmental, disease register and primary care clinical data. ( 0,529455805648376 )
J Biomed Inform - An automated technique for identifying associations between medications, laboratory results and problems. ( 0,528797475194281 )
Artif Intell Med - Development of traditional Chinese medicine clinical data warehouse for medical knowledge discovery and decision support. ( 0,528715094683536 )
Methods Inf Med - Upper-level ontologies for health information systems. Towards an archetype patterns approach. ( 0,524762518153195 )
J Med Syst - Linkage of data from diverse data sources (LDS): a data combination model provides clinical data of corresponding specimens in biobanking information system. ( 0,523956215833255 )
Appl Clin Inform - Multilingual Medical Data Models in ODM Format: A Novel Form-based Approach to Semantic Interoperability between Routine Healthcare and Clinical Research. ( 0,518888480388324 )
Appl Clin Inform - Concept and Implementation of a Single Source Information System in Nuclear Medicine for Myocardial Scintigraphy (SPECT-CT data). ( 0,518887949918662 )
J Chem Inf Model - Frequency of occurrence and potency range distribution of activity cliffs in bioactive compounds. ( 0,517409461265725 )
Methods Inf Med - Prioritising lexical patterns to increase axiomatisation in biomedical ontologies. The role of localisation and modularity. ( 0,516180697732073 )
Sci Data - Systematic global assessment of reef fish communities by the Reef Life Survey program. ( 0,516066876608753 )
J Am Med Inform Assoc - Electronic health records based phenotyping in next-generation clinical trials: a perspective from the NIH Health Care Systems Collaboratory. ( 0,515219143133061 )
J Biomed Inform - The ISO/IEC 11179 norm for metadata registries: does it cover healthcare standards in empirical research? ( 0,514260526631848 )
Perspect Health Inf Manag - Integrating research data capture into the electronic health record workflow: real-world experience to advance innovation. ( 0,514183042023904 )
J Am Med Inform Assoc - Using ontology-based annotation to profile disease research. ( 0,51333567333034 )
IEEE Trans Vis Comput Graph - Abstracting Attribute Space for Transfer Function Exploration and Design. ( 0,512820512820513 )
J Biomed Inform - Summarizing clinical pathways from event logs. ( 0,512305702168976 )
Comput Methods Programs Biomed - SOA-based digital library services and composition in biomedical applications. ( 0,510844856570179 )
AMIA Annu Symp Proc - Quantifying clinical data quality using relative gold standards. ( 0,507310018025937 )
J Biomed Inform - Integrating electronic health record information to support integrated care: practical application of ontologies to improve the accuracy of diabetes disease registers. ( 0,506853385316744 )
Comput Methods Programs Biomed - A sharable cloud-based pancreaticoduodenectomy collaborative database for physicians: emphasis on security and clinical rule supporting. ( 0,506445836357508 )
BMC Med Inform Decis Mak - Combining classifiers for robust PICO element detection. ( 0,506322933813299 )
IEEE Trans Vis Comput Graph - Splatterplots: Overcoming Overdraw in Scatter Plots. ( 0,505864932628666 )
J Am Med Inform Assoc - Web-scale pharmacovigilance: listening to signals from the crowd. ( 0,505269788394215 )
J Biomed Inform - An ontological modeling approach to cerebrovascular disease studies: the NEUROWEB case. ( 0,505244755244755 )
Methods Inf Med - Health level seven interoperability strategy: big data, incrementally structured. ( 0,503814140375555 )
AMIA Annu Symp Proc - Drug repositioning using disease associated biological processes and network analysis of drug targets. ( 0,503095386530942 )
AMIA Annu Symp Proc - Mining the human phenome using semantic web technologies: a case study for Type 2 Diabetes. ( 0,502723942604553 )
IEEE J Biomed Health Inform - Big heart data: advancing health informatics through data sharing in cardiovascular imaging. ( 0,501754884637872 )
J Chem Inf Model - Kinome-wide activity modeling from diverse public high-quality data sets. ( 0,50145573900351 )
Perspect Health Inf Manag - Use of structured and unstructured data to identify contraceptive use in women veterans. ( 0,500003669980659 )
J Med Syst - Building clinical data groups for electronic medical record in China. ( 0,49954551355615 )
BMC Med Inform Decis Mak - A survey on computer aided diagnosis for ocular diseases. ( 0,499235576692233 )
J Biomed Inform - Exploring the ncRNA-ncRNA patterns based on bridging rules. ( 0,498328361174141 )
AMIA Annu Symp Proc - PubMedMiner: Mining and Visualizing MeSH-based Associations in PubMed. ( 0,497408698691362 )
BMC Med Inform Decis Mak - CIS-based registration of quality of life in a single source approach. ( 0,49705797058489 )
J Integr Bioinform - MEMOPS: data modelling and automatic code generation. ( 0,496790933065642 )
J Am Med Inform Assoc - Seeing the forest through the trees: uncovering phenomic complexity through interactive network visualization. ( 0,496533273950049 )
J Med Syst - Automated mapping of clinical terms into SNOMED-CT. An application to codify procedures in pathology. ( 0,496367712164768 )
J Am Med Inform Assoc - Exploiting time in electronic health record correlations. ( 0,495572010594465 )
Brief. Bioinformatics - Evaluation of research in biomedical ontologies. ( 0,495260556543649 )
J Biomed Inform - A multi-technique approach to bridge electronic case report form design and data standard adoption. ( 0,495203074899601 )
J Biomed Inform - Is standard multivariate analysis sufficient in clinical and epidemiological studies? ( 0,495003272311484 )