Brief. Bioinformatics - Next-generation sequencing: a challenge to meet the increasing demand for training workshops in Australia.

Tópicos

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Resumo

The widespread adoption of high-throughput next-generation sequencing (NGS) technology among the Australian life science research community is highlighting an urgent need to up-skill biologists in tools required for handling and analysing their NGS data. There is currently a shortage of cutting-edge bioinformatics training courses in Australia as a consequence of a scarcity of skilled trainers with time and funding to develop and deliver training courses. To address this, a consortium of Australian research organizations, including Bioplatforms Australia, the Commonwealth Scientific and Industrial Research Organisation and the Australian Bioinformatics Network, have been collaborating with EMBL-EBI training team. A group of Australian bioinformaticians attended the train-the-trainer workshop to improve training skills in developing and delivering bioinformatics workshop curriculum. A 2-day NGS workshop was jointly developed to provide hands-on knowledge and understanding of typical NGS data analysis workflows. The road show-style workshop was successfully delivered at five geographically distant venues in Australia using the newly established Australian NeCTAR Research Cloud. We highlight the challenges we had to overcome at different stages from design to delivery, including the establishment of an Australian bioinformatics training network and the computing infrastructure and resource development. A virtual machine image, workshop materials and scripts for configuring a machine with workshop contents have all been made available under a Creative Commons Attribution 3.0 Unported License. This means participants continue to have convenient access to an environment they had become familiar and bioinformatics trainers are able to access and reuse these resources.

Resumo Limpo

widespread adopt highthroughput nextgener sequenc ngs technolog among australian life scienc research communiti highlight urgent need upskil biologist tool requir handl analys ngs data current shortag cuttingedg bioinformat train cours australia consequ scarciti skill trainer time fund develop deliv train cours address consortium australian research organ includ bioplatform australia commonwealth scientif industri research organis australian bioinformat network collabor emblebi train team group australian bioinformatician attend trainthetrain workshop improv train skill develop deliv bioinformat workshop curriculum day ngs workshop joint develop provid handson knowledg understand typic ngs data analysi workflow road showstyl workshop success deliv five geograph distant venu australia use newli establish australian nectar research cloud highlight challeng overcom differ stage design deliveri includ establish australian bioinformat train network comput infrastructur resourc develop virtual machin imag workshop materi script configur machin workshop content made avail creativ common attribut unport licens mean particip continu conveni access environ becom familiar bioinformat trainer abl access reus resourc

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