Comput Math Methods Med - A pipeline for neuron reconstruction based on spatial sliding volume filter seeding.

Tópicos

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Resumo

Neuron's shape and dendritic architecture are important for biosignal transduction in neuron networks. And the anatomy architecture reconstruction of neuron cell is one of the foremost challenges and important issues in neuroscience. Accurate reconstruction results can facilitate the subsequent neuron system simulation. With the development of confocal microscopy technology, researchers can scan neurons at submicron resolution for experiments. These make the reconstruction of complex dendritic trees become more feasible; however, it is still a tedious, time consuming, and labor intensity task. For decades, computer aided methods have been playing an important role in this task, but none of the prevalent algorithms can reconstruct full anatomy structure automatically. All of these make it essential for developing new method for reconstruction. This paper proposes a pipeline with a novel seeding method for reconstructing neuron structures from 3D microscopy images stacks. The pipeline is initialized with a set of seeds detected by sliding volume filter (SVF), and then the open curve snake is applied to the detected seeds for reconstructing the full structure of neuron cells. The experimental results demonstrate that the proposed pipeline exhibits excellent performance in terms of accuracy compared with traditional method, which is clearly a benefit for 3D neuron detection and reconstruction.

Resumo Limpo

neuron shape dendrit architectur import biosign transduct neuron network anatomi architectur reconstruct neuron cell one foremost challeng import issu neurosci accur reconstruct result can facilit subsequ neuron system simul develop confoc microscopi technolog research can scan neuron submicron resolut experi make reconstruct complex dendrit tree becom feasibl howev still tedious time consum labor intens task decad comput aid method play import role task none preval algorithm can reconstruct full anatomi structur automat make essenti develop new method reconstruct paper propos pipelin novel seed method reconstruct neuron structur d microscopi imag stack pipelin initi set seed detect slide volum filter svf open curv snake appli detect seed reconstruct full structur neuron cell experiment result demonstr propos pipelin exhibit excel perform term accuraci compar tradit method clear benefit d neuron detect reconstruct

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